Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0538 ATGGCCAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTGAAAACTAGGATATGGCTAGGAACTTTTGAAACTGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCAAGGCTAATGTGTGGCACAAGAGCAAGAACTAACTTCCCTTACAACCCCAATGCGTCTCAGTCATCATCTTCCAAGCTTCTCTCAGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCATCACAGGCAGAGCCTCAGAGAGTGGCTTCACCAAATGTCATCACCTCCTCCGCGAGCAACTTCTCCATGAAGAGTAACGAAACTGAGACATTGTTGTTGCCACAAAAGAGACAAGAAGAGGAGCAAGAAGCAGAAGGGAATTGGGTTTTCAAGAAGGTTAAGGTGGAAAATGCTCAGCAGTTCAAGCCTCTTGAAGAGGACCACATCGAGCAAATGATAGAGGAGTTGCTGCATTACGGGTCTATTGAGCTATGCTCTGTGATTCCACCACAGGCTCTTTGA 582 0.4708 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSQAEPQRVASPNVITSSASNFSMKSNETETLLLPQKRQEEEQEAEGNWVFKKVKVENAQQFKPLEEDHIEQMIEELLHYGSIELCSVIPPQAL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0538 193 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Gso4g0538 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gso4g0538 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Gso4g0538 193 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Gso4g0538 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Gso4g0538 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gso4g0538 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 187 - -
Gso4g0538 193 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gso4g0538 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gso4g0538 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0538 Gso-Chr4 5198619 5199946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0538 1 193 AP2-EREBP Transcription Factor Family AT5G25190 65.285 1.47e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g0538 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0538 - - gmx:100804510 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0538 4 5198619 5199946 Gso6g0532 6 4927669 4928903 GST
Gso14g0968 14 13122804 13124406 Gso4g0538 4 5198619 5199946 PCT
Gso17g1828 17 36564727 36566032 Gso4g0538 4 5198619 5199946 PCT
Gso4g0538 4 5198619 5199946 Gso14g0968 14 13122804 13124406 PCT
Gso4g0538 4 5198619 5199946 Gso17g1828 17 36564727 36566032 PCT