Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0535 ATGGAAACACTGAGCCACGAGCCTCTTCTCTATGATAACTCTGCTGGAGAGACTCCACCAAGTCCAAGCACACCATTGCAGAATTCACGGGAGAAGAAACAACTATCTGTTAAGGAAGAAGAAGAGGAAGAAAAGGAGGCAAAAGCAGATACTTTATTGGATCTAAATGCCCCTGGTGGTGATTCTGCTATTGGGTGCAGTCCAGTGCTGAATCTGATCACGTGTTTGGACACAGATTTGTCAAGCACCACATCAGAAAACCAACATGGCTCAGAGCCACGAGTGTTCTCTTGCAACTATTGTCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAAGAGAGAGAGGTCAATTGCAAAGAGAGGTCATCAAAGATCAGGATCACGTTTGATGGCCTCAGCTACAACAGCTCTGGGAATTCCCTTTCTCCATAATCACCTTCACCACCACTATGCCACTATGGCTTCTCTGCCTCTCCATGGTGCTTCTAGTAATAATAAACCACTTGGAATTCAGGCTCACTCCATTATTCACAAGCCTTCTTCTTCAAATTATTCTCATTTTTCATTCAATGGGTTTGGAACCACTTTTGGACATCGTGGTTGGTCTAGACCCCTTATTGATCAACAACCTGGAATAGGGAAGCTAACGATGGAAAGTTTTCACAAAACATCAAGAGGCAATGTTGGGAAATTCGATGTGGTGAAAACGACCAGGCTTAATTCAGCGACCAATGAAGAAATCAGTGGATATATGGTTAGTGGTATTAGTCTTTTGAAGACTAATCAAGAGGAAATGAAGCACCTTGACTTGTCCCTAAAGCTCTAA 846 0.435 METLSHEPLLYDNSAGETPPSPSTPLQNSREKKQLSVKEEEEEEKEAKADTLLDLNAPGGDSAIGCSPVLNLITCLDTDLSSTTSENQHGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHQRSGSRLMASATTALGIPFLHNHLHHHYATMASLPLHGASSNNKPLGIQAHSIIHKPSSSNYSHFSFNGFGTTFGHRGWSRPLIDQQPGIGKLTMESFHKTSRGNVGKFDVVKTTRLNSATNEEISGYMVSGISLLKTNQEEMKHLDLSLKL* 282
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0535 281 MobiDBLite consensus disorder prediction 16 31 - -
Gso4g0535 281 MobiDBLite consensus disorder prediction 32 48 - -
Gso4g0535 281 MobiDBLite consensus disorder prediction 111 135 - -
Gso4g0535 281 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 281 - -
Gso4g0535 281 MobiDBLite consensus disorder prediction 1 48 - -
Gso4g0535 281 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 281 IPR044246 GO:0009788
Gso4g0535 281 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Gso4g0535 281 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Gso4g0535 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Gso4g0535 281 Gene3D Classic Zinc Finger 75 144 - -
Gso4g0535 281 Coils Coil 26 50 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso4g0535 Gso-Chr4 5151384 5152501 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0535 21 281 C2H2 Transcription Factor Family AT5G10970 40.000 8.88e-46 153
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso4g0535 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0535 - - gmx:100819663 551.592
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0535 4 5151384 5152501 Gso6g0529 6 4888739 4889927 GST
Gso14g0963 14 12943017 12944520 Gso4g0535 4 5151384 5152501 PCT
Gso17g1832 17 36693955 36695603 Gso4g0535 4 5151384 5152501 PCT
Gso4g0535 4 5151384 5152501 Gso14g0963 14 12943017 12944520 PCT
Gso4g0535 4 5151384 5152501 Gso17g1832 17 36693955 36695603 PCT