Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso4g0535 | ATGGAAACACTGAGCCACGAGCCTCTTCTCTATGATAACTCTGCTGGAGAGACTCCACCAAGTCCAAGCACACCATTGCAGAATTCACGGGAGAAGAAACAACTATCTGTTAAGGAAGAAGAAGAGGAAGAAAAGGAGGCAAAAGCAGATACTTTATTGGATCTAAATGCCCCTGGTGGTGATTCTGCTATTGGGTGCAGTCCAGTGCTGAATCTGATCACGTGTTTGGACACAGATTTGTCAAGCACCACATCAGAAAACCAACATGGCTCAGAGCCACGAGTGTTCTCTTGCAACTATTGTCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAAGAGAGAGAGGTCAATTGCAAAGAGAGGTCATCAAAGATCAGGATCACGTTTGATGGCCTCAGCTACAACAGCTCTGGGAATTCCCTTTCTCCATAATCACCTTCACCACCACTATGCCACTATGGCTTCTCTGCCTCTCCATGGTGCTTCTAGTAATAATAAACCACTTGGAATTCAGGCTCACTCCATTATTCACAAGCCTTCTTCTTCAAATTATTCTCATTTTTCATTCAATGGGTTTGGAACCACTTTTGGACATCGTGGTTGGTCTAGACCCCTTATTGATCAACAACCTGGAATAGGGAAGCTAACGATGGAAAGTTTTCACAAAACATCAAGAGGCAATGTTGGGAAATTCGATGTGGTGAAAACGACCAGGCTTAATTCAGCGACCAATGAAGAAATCAGTGGATATATGGTTAGTGGTATTAGTCTTTTGAAGACTAATCAAGAGGAAATGAAGCACCTTGACTTGTCCCTAAAGCTCTAA | 846 | 0.435 | METLSHEPLLYDNSAGETPPSPSTPLQNSREKKQLSVKEEEEEEKEAKADTLLDLNAPGGDSAIGCSPVLNLITCLDTDLSSTTSENQHGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHQRSGSRLMASATTALGIPFLHNHLHHHYATMASLPLHGASSNNKPLGIQAHSIIHKPSSSNYSHFSFNGFGTTFGHRGWSRPLIDQQPGIGKLTMESFHKTSRGNVGKFDVVKTTRLNSATNEEISGYMVSGISLLKTNQEEMKHLDLSLKL* | 282 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso4g0535 | 281 | MobiDBLite | consensus disorder prediction | 16 | 31 | - | - | |
Gso4g0535 | 281 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
Gso4g0535 | 281 | MobiDBLite | consensus disorder prediction | 111 | 135 | - | - | |
Gso4g0535 | 281 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 5 | 281 | - | - | |
Gso4g0535 | 281 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Gso4g0535 | 281 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 5 | 281 | IPR044246 | GO:0009788 | |
Gso4g0535 | 281 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 98 | 118 | IPR013087 | - | |
Gso4g0535 | 281 | SUPERFAMILY | beta-beta-alpha zinc fingers | 93 | 123 | IPR036236 | - | |
Gso4g0535 | 281 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 96 | 123 | IPR013087 | - | |
Gso4g0535 | 281 | Gene3D | Classic Zinc Finger | 75 | 144 | - | - | |
Gso4g0535 | 281 | Coils | Coil | 26 | 50 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso4g0535 | Gso-Chr4 | 5151384 | 5152501 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso4g0535 | 21 | 281 | C2H2 Transcription Factor Family | AT5G10970 | 40.000 | 8.88e-46 | 153 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso4g0535 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso4g0535 | - | - | gmx:100819663 | 551.592 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso4g0535 | 4 | 5151384 | 5152501 | Gso6g0529 | 6 | 4888739 | 4889927 | GST | |
Gso14g0963 | 14 | 12943017 | 12944520 | Gso4g0535 | 4 | 5151384 | 5152501 | PCT | |
Gso17g1832 | 17 | 36693955 | 36695603 | Gso4g0535 | 4 | 5151384 | 5152501 | PCT | |
Gso4g0535 | 4 | 5151384 | 5152501 | Gso14g0963 | 14 | 12943017 | 12944520 | PCT | |
Gso4g0535 | 4 | 5151384 | 5152501 | Gso17g1832 | 17 | 36693955 | 36695603 | PCT |