Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0534 ATGACCGTAGAGAAGAAAAGGAATGATTCCGGCGACGAGTTCCCCGTCGGAATGCGTGTTCTTGCCGTCGATGATGACCCCACTTGCCTCTTGGTTCTGAAAACTCTCCTCCAAAGATGTCAATATCATGTAACCACGACTAATCAAGCAATAAAGGCGTTGGCTCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTACACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGATCTTCCTGTCATAATGTTATCTGCAAATGGTGATACGAAGATGGTGATGAAGGGGATTTCTCATGGGGCCTGTGATTATCTGCTGAAACCTGTGAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACCAGCAACCTAGACAAACCTACTTCTAATAGTGGAAATGGACTAGGGTCATCAGGAACAGGAAATTCTGATCAAAATGAGAAGCTGACTAAGAAAAGGAAGGATCAAGATGAAGATGAAGATGAGGATCAGGAGAATGATCTTGACAATGAGGACCCATCAGCCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGACCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAATGTTTCTGCTTTATGAATTGGCTGCAGAAGTATAGGCTTTATCTGAAAAGAATTAGCTGTGTGGCTAACCAACAAGCCAATATGGTGGCGGCCTTAGGGGTTGCAGATCCATCCTATTTGAGAATGAGTTCGGTGAGCGGGGTTGGACATGTACAAACATTAAGTGGTTCCGGACAGCTTCATAACAATAATTTCAGATCCTTTCCACCTAGTGGGATAATTAATAGATTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCTTCTGGAGTACTTCAATTGAGTCAATCACAAAATTTAAACAATGCCAATGATCATCATAAATTCCAGTCAGTCATTGTTCCTGTTAATCAGAATGGTGTTCAGGGAATGACAGTGTCTGTAGGGCTTGATCAACTGCAAAACAATAAGGTTGTTATGTCTGTTCAGAACCTGACCACTGTTTTTGATGCCAAAACAACTTTTCCTATCCCAAATAAACTCCCAGATCCAAGACCAAAAATAACCAACTCTGTCTCTCATACTTCAGATGTGCATTTCTCAAACAATGCCTTGATGTTGGAACCACGCCCTCAAGGCTCACAAGGGAGTGTAAGAATTGGAACATTATCTTCTTCAGTAGCCTCTCAACATTCGGAATTTTCTTTGTCTTTGCTGGATCAAGGTAGATATAGTGATAATTGGACAAGTGCTGTGCAGCCATCTGTGATCCAGACAAACTTTTTCCCTCCAAGTGAATGTTTTAGACAGACTAATATACCTCCTGCAGATAACATGGCTTCTGTACCCTTGCAAGGTGGGAATCTAAGTGGTCCATCCATCACTTCATTGTCCAGGCAATCCCATGATTCAATGACAGAAATGCACTCTGAAGGAATGACTTTTACTAACAGACCTGGGCATACAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCATAATCAGGATGCTACTCACCATTCAAATATTATGTCAATAAACTCACTGACTCCAGTCAATGGGGCTGCTGTTCAAGCTGGCCATGCAGCAACGAACTCGGTCTTACACAGAAACTTGGATTTTAATTATTGTGATCCCTTACAAATGAAGCATGAAGGGTTTGTGGAGTTAACTGATGAGACCTTATTGAAACAACATCAGGGGAATACCATGGACCAGCAAAAATCTCAAGAAAATCATTTCTCTAATAATCTTGGTTCACTGGAAGACTTGGTCAGTTCAATGATGAAATAG 1923 0.4217 MTVEKKRNDSGDEFPVGMRVLAVDDDPTCLLVLKTLLQRCQYHVTTTNQAIKALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKMVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSNSGNGLGSSGTGNSDQNEKLTKKRKDQDEDEDEDQENDLDNEDPSAQKKPRVVWSVDLHRKFVAAVNQLGIDKCFCFMNWLQKYRLYLKRISCVANQQANMVAALGVADPSYLRMSSVSGVGHVQTLSGSGQLHNNNFRSFPPSGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNANDHHKFQSVIVPVNQNGVQGMTVSVGLDQLQNNKVVMSVQNLTTVFDAKTTFPIPNKLPDPRPKITNSVSHTSDVHFSNNALMLEPRPQGSQGSVRIGTLSSSVASQHSEFSLSLLDQGRYSDNWTSAVQPSVIQTNFFPPSECFRQTNIPPADNMASVPLQGGNLSGPSITSLSRQSHDSMTEMHSEGMTFTNRPGHTSSNVPFQGWDDHNQDATHHSNIMSINSLTPVNGAAVQAGHAATNSVLHRNLDFNYCDPLQMKHEGFVELTDETLLKQHQGNTMDQQKSQENHFSNNLGSLEDLVSSMMK* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0534 640 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Gso4g0534 640 CDD REC_typeB_ARR-like 20 134 - -
Gso4g0534 640 Gene3D - 207 231 - -
Gso4g0534 640 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Gso4g0534 640 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 639 - -
Gso4g0534 640 MobiDBLite consensus disorder prediction 150 171 - -
Gso4g0534 640 Gene3D - 18 206 - -
Gso4g0534 640 Coils Coil 172 192 - -
Gso4g0534 640 PIRSF RR_ARR_type-B 235 640 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso4g0534 640 PIRSF RR_ARR_type-B 1 231 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso4g0534 640 MobiDBLite consensus disorder prediction 611 633 - -
Gso4g0534 640 MobiDBLite consensus disorder prediction 611 640 - -
Gso4g0534 640 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 639 IPR045279 GO:0009736
Gso4g0534 640 SMART REC_2 18 130 IPR001789 GO:0000160
Gso4g0534 640 SUPERFAMILY CheY-like 17 141 IPR011006 -
Gso4g0534 640 MobiDBLite consensus disorder prediction 141 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0534 Gso-Chr4 5134408 5138898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0534 1 365 Response Regulator Gene Family AT2G25180 54.082 7.21e-114 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso4g0534 Response_reg 6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0534 - K14491 gmx:100793913 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0534 4 5134408 5138898 Gso6g0528 6 4866363 4871382 GST
Gso14g0962 14 12817767 12823700 Gso4g0534 4 5134408 5138898 PCT
Gso17g1835 17 36770504 36776719 Gso4g0534 4 5134408 5138898 PCT
Gso4g0534 4 5134408 5138898 Gso14g0962 14 12817767 12823700 PCT
Gso4g0534 4 5134408 5138898 Gso17g1835 17 36770504 36776719 PCT