Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0533 ATGAGTAGCTTGGTGGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCAATTTATAATCTTGACGAGTCAGATGACGATGCTGATCTTTTGCCAAGAAAATCCGGGACAACTCAGGAAAAGATAGAGAGGATAGAGAGAAGTGATGCGAAAGAGAATTTATGTCAAGCATGTGGTGAAAATGAAAATCTTGTGAGCTGTGGAACGTGCACATATGCTTACCATCCTAGGTGTTTACTTCCACCCCTTAAAGGTCCCCTTCCAGACAATTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGATGCGGCCTACTACTGCTGCTGACAATGATGCCACAAAATTAGGGTCAAAGCAAATTTTTGTCAAACAATACCTCGTTAAGTGGAAGGGCCTATCCTATTTGCATTGCACATGGGTGCCTGAGAAAGAGTTTCTGAAAGCATTTAAGACTCATCCTCGTCTAAAGACCAAGGTGAACAACTTCCATCAAAAAATGGCATCTGTCAATACTTCTGACGAAGACTTTGTTGCCATTCGACCCGAATGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGATGATGATGAGAGGGAATATCTTGTGAAGTGGAAGGAGCTTCCATATGATGAATGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATCGAAAGATTCAATAGATTGCGGTCTAGATCCAGCAAATTTTCTTCCAGTAAACAAAAAAACAGTGTTAAGGATGATGCTGAATTAAAGAAACAGCAGAAAGAATTTCAACATTATGAACAAAGTCCTGAGTTTCTTTCAGGTGGTACATTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTTTAAAGAGGGTGTCTCCCCACATCTGGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAACGTGAATTCGCAACATGGGCACCTCAAATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAATGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAACTGAAGAAGATCAAGAAAAAGAAATCTGGTCATTTAATTAGTGAAAGCAAGCAAGACAGGATTAAGTTTGATGTTCTTTTGACATCATATGAAATGATCAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAAACATCGTGTTCTCTTGACAGGAACTCCTCTTCAGAACAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATCAAGAGGAACAAATTTCAAGGCTTCATAAAATGTTGGCCCCGCATCTCCTGAGAAGAGTGAAGAAAGATGTCATGAAGGAGCTACCTCCTAAAAAGGAACTTATTCTACGTATTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGCGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAACCTGATATTGATGATGCAAAAGAAGCATTCAAACAGCTGCTGGAATCATCGGGGAAGTTGCAATTGCTGGACAAGATGATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTACATACAAGAATTGGCAGTATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTCAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCAGGGGGCCTGGGGATAAACCTTGCAACCGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGGGGAACTATTGAAGAAAGGATGATGCAGATGACTAAGAAGAAAATGGTGTTAGAACACCTAGTTGTAGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGATATGGCTCAAAGGAGTTATTTGCAGATGAGAATGATGAAGCAGGCAAATCCCGCCAAATTCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCTACTTTGGATGATGAAGATGAAGATGGATTTCTGAAGGCTTTTAAGGTTGCAAATTTTGAATATGTTGATGAGGCTGAGGCTGCAGCAGAGGAGGCAGCACAAAAAAGAGCAATGGAGACACTTAACAGTTCAGAAAGGACACATTACTGGGAGGAGTTGTTAAGAGACAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCCTGGGCAAGGGGAAGCGAAACCGGAAGTTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAGCTTACTGATGGTGATTCAAATTCCACTGGAACTACAACTGCTAGAAGACCTTATAAAAAAAAAGCACGTACAGCAGATAGCACAGAGCCACATCCTCTAATGGAAGGTGAAGGAAAAGCATTCAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCATGAAACAGAAGACTTACGAAGAAATCAAAGACTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCACCACATTCGCAGATGGTGTTCCAAAAGAAGGACTCCGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGACAAGGTGAAGTATGCGTCACAACATCCTCAAACTCCATTGTTTTCAGATGACATATTATTACGCTATCCAGGATTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTGGTTTTGCTACGTGCTGTTTTGAAACATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGGTCATATGTCAGGAGTTGAATCTTCCCTTTATAAACTTACCAGTTCCAGGACACGTTAGTTCTCAGGCACAAAATGGTGCAAATTTGACAAATGCAGAAGTACCCAACAGTCAATCCAAGGAAAATGGTGGGAGTGATATAGCAACTGATGGTGCACAAGGTTCTGGTGATGCTAGGAACCAAGCACAGTTATATCAAGATTCGTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAATCAAATGAAGCAACAAATGAAGAACTTAAAAGTGAAACCAAGGCTACTAATTTCCCAAGTGATAAATTAGGGGACAGTGACACCAAAATGATTGATCAACTTCCGCAAGTAGAAACAATAGCTTCAGAAGAAATTGTGGCTGCATGTGATAGTGATCCCAATCAATTGGAGTTAGCTCGCCTTTACAATGAGATGTGCAAGGCAGTGGAGGAAGACCCCATGGATTTAGTTCAAAGTTCTTTGGCAAGAGAACCGGCAGAGCTCAATGTAGTGAAGAATTTCCCTCCACTAGAAACTATTTGCGAAGACATTAACAGAATCCTAACACCCACACAAGAACAACCTATTGCAGAAATGCCAATATCGAATTCAGATAAGCAATCAGAGGCTTTGTCACACGGTGAAAATTTGGCCTCCAAATCACCGCCAATTCCTCAAGATGCCTGCAAGCCTAAAGATTCAGCGGACAATGAGAGTAAAGATAAGAAAATAGAATCGGAATCTATAAAAGAAAGCTGTTCAAGCCTGGTAGAAGAGAAGAATGAAACACTAACTCTTCCGGATAAAGAGGATAGTAAAACAGAAATTGATGAAACTATGAATGATGCCGAGTTGAATGAAAACCCGGAGAAATCCGATGCTGTATTGGATGGTTAA 4329 0.4024 MSSLVERLRVRSDRRPIYNLDESDDDADLLPRKSGTTQEKIERIERSDAKENLCQACGENENLVSCGTCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKTHPRLKTKVNNFHQKMASVNTSDEDFVAIRPEWTTVDRILACRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRLRSRSSKFSSSKQKNSVKDDAELKKQQKEFQHYEQSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKEGVSPHLVVAPLSTLRNWEREFATWAPQMNVLMYVGSAQARNVIREYEFYFPKKLKKIKKKKSGHLISESKQDRIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRIELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETLNSSERTHYWEELLRDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTTTARRPYKKKARTADSTEPHPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSTTFADGVPKEGLRIQDVLVRIAVLLLIRDKVKYASQHPQTPLFSDDILLRYPGLKGAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVPGHVSSQAQNGANLTNAEVPNSQSKENGGSDIATDGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDPKSNEATNEELKSETKATNFPSDKLGDSDTKMIDQLPQVETIASEEIVAACDSDPNQLELARLYNEMCKAVEEDPMDLVQSSLAREPAELNVVKNFPPLETICEDINRILTPTQEQPIAEMPISNSDKQSEALSHGENLASKSPPIPQDACKPKDSADNESKDKKIESESIKESCSSLVEEKNETLTLPDKEDSKTEIDETMNDAELNENPEKSDAVLDG* 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0533 1442 SMART chromo_7 190 244 IPR000953 -
Gso4g0533 1442 SMART chromo_7 99 162 IPR000953 -
Gso4g0533 1442 Gene3D - 1037 1212 - -
Gso4g0533 1442 SMART PHD_3 53 96 IPR001965 -
Gso4g0533 1442 Coils Coil 838 858 - -
Gso4g0533 1442 CDD CD2_tandem 190 239 - -
Gso4g0533 1442 SMART helicmild6 638 722 IPR001650 -
Gso4g0533 1442 MobiDBLite consensus disorder prediction 904 955 - -
Gso4g0533 1442 SMART ultradead3 282 495 IPR014001 -
Gso4g0533 1442 ProSiteProfiles Chromo and chromo shadow domain profile. 192 251 IPR000953 -
Gso4g0533 1442 CDD SF2_C_SNF 607 733 - -
Gso4g0533 1442 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1056 - -
Gso4g0533 1442 SUPERFAMILY Chromo domain-like 66 177 IPR016197 -
Gso4g0533 1442 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Gso4g0533 1442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 102 IPR013083 -
Gso4g0533 1442 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Gso4g0533 1442 Pfam CHD subfamily II, DUF1087 844 902 IPR009463 -
Gso4g0533 1442 MobiDBLite consensus disorder prediction 1147 1173 - -
Gso4g0533 1442 ProSiteProfiles Chromo and chromo shadow domain profile. 100 182 IPR000953 -
Gso4g0533 1442 SMART DUF1087_2 839 905 IPR009463 -
Gso4g0533 1442 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Gso4g0533 1442 SMART DUF1086_2 910 1070 IPR009462 GO:0003677|GO:0006338
Gso4g0533 1442 Pfam SNF2-related domain 306 586 IPR000330 GO:0005524|GO:0140658
Gso4g0533 1442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Gso4g0533 1442 MobiDBLite consensus disorder prediction 1347 1442 - -
Gso4g0533 1442 Pfam PHD-finger 54 96 IPR019787 -
Gso4g0533 1442 MobiDBLite consensus disorder prediction 1375 1442 - -
Gso4g0533 1442 MobiDBLite consensus disorder prediction 940 955 - -
Gso4g0533 1442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Gso4g0533 1442 MobiDBLite consensus disorder prediction 1221 1249 - -
Gso4g0533 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 519 IPR027417 -
Gso4g0533 1442 Gene3D - 103 175 - -
Gso4g0533 1442 Gene3D - 180 241 - -
Gso4g0533 1442 CDD CD1_tandem 98 171 - -
Gso4g0533 1442 Gene3D - 529 753 IPR027417 -
Gso4g0533 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 777 IPR027417 -
Gso4g0533 1442 Pfam Chromo (CHRromatin Organisation MOdifier) domain 193 241 IPR023780 -
Gso4g0533 1442 Pfam Chromo (CHRromatin Organisation MOdifier) domain 102 157 IPR023780 -
Gso4g0533 1442 Pfam CHD subfamily II, SANT-like domain 933 1067 IPR009462 GO:0003677|GO:0006338
Gso4g0533 1442 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1056 - -
Gso4g0533 1442 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Gso4g0533 1442 Gene3D - 278 528 IPR038718 -
Gso4g0533 1442 SUPERFAMILY Chromo domain-like 178 242 IPR016197 -
Gso4g0533 1442 MobiDBLite consensus disorder prediction 904 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0533 Gso-Chr4 5111123 5132607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0533 308 783 RAD5 or RAD16-like Gene Family AT1G02670 23.540 1.03e-30 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso4g0533 SNF2_N 4.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0533 K11643 - gmx:100790230 2800
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0533 4 5111123 5132607 Gso6g0527 6 4846115 4863948 GST
Gso17g1837 17 36830585 36854149 Gso4g0533 4 5111123 5132607 PCT
Gso4g0533 4 5111123 5132607 Gso17g1837 17 36830585 36854149 PCT