Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0529 ATGGCAAAGTGTCATCAGAACAACGTCGGATCCATCGCTCTTGACCACCGCCACTCCGCCAAAAATGCCACCGCCGCCGGCCACTTCCGCGTGCTCCGCCGCTTGATCTTCGACGCCGTCAGCTGCGGCGGCACCTCTCGCTACCGGTATCGCCAGCGCGGTGGCGATGTCAGCGACGGCGGTGACTTCAGCTCAGCGGCGTGCCACACAGAGAAGGAGGAGAGGTCGGAGAAGCTATCGGATCTTCTGAACGCAGCGGAGAATAAAATGGCGGCGGCGGAGGAGGAGAAGAAGAAGGAAGAGGCACTGGCGGAACTGAAGCAAGTGGTGAAGGAGCTGCGCGAAGAAGACTTTAGGAAGCAGCGAATCGCCGCTGCGAGAGTGAGGTCACTAGCGAAGGAAGATTCGGAAGCGAGAGTGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGGATGCTCGATTCAGAAGACGCTCATTCTCAAATCGCATCGCTCTACGCATTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATTGGTGCGGTGCACAAGATGCTGAAGCTAATCGAATCGAGCGGTTTAGATTCGTCGGTGTCTGAAGCGATTGTTGCAAATTTCCTCGGATTAAGCGCTTTGGATTCGAACAAACCGATAATTGGATCCTCCGGTGCAATACCGTTCCTAGTTAGAACCCTAACGAATTTAAACGATAGTAAAAGCACGTCTCAATCCCAATCGCAAGTGAAGCAAGATGCTATGCGAGCTTTGTACAATCTCTCGATCTGTCAGAGCAACGTTTCAGTAGTTTTGGAAACAGATTTGGTTTGGTTTCTAGTGTCCACAATAGGAGACATGGAAGTGAGCGAGAGAAGTCTCGCGATTCTGAGCAATTTAGTGTCGACTCCGGAGGGTAGAAAAGCGATTAGCAGCGTTCGCGACGCGATTCCGATTCTTGTGGACGCGTTGAGTTGGACGGACTCGCCGGAGTGCCAAGAGAAGGCGTCGTACGTTTTGATGATAATGGCGCACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCAGGGATAGTGTCGTCGCTGCTTGAGTTAACGCTCGTGGGAACCACGCTGGCTCAAAAGAGAGCCTCCAGAATATTGGAGTGTTTGAGGATAGACAAAGGGAAACAGGTTTCTGGAAGTTACGGTGGAAACTTTAACTTGGGTGTCTCTGCTCCTATTTGTGGATCTTCTTCTTCTTCGTCGAAAGGGTGCTTGGTGGAGGAAGATGGGATCATGAGTGAGGAAAAGAAAGCGGTGAAGCAGTTAGTGCAGCAGAGTTTGCAGAGCAATATGATCAAGATTGTCAAGAGGGCTAACTTGCGTCACGATTTTGTTACATCTACCCATTTTGCTTCACTCACTTCCAAGAGTCTCCCATTTTGA 1449 0.5107 MAKCHQNNVGSIALDHRHSAKNATAAGHFRVLRRLIFDAVSCGGTSRYRYRQRGGDVSDGGDFSSAACHTEKEERSEKLSDLLNAAENKMAAAEEEKKKEEALAELKQVVKELREEDFRKQRIAAARVRSLAKEDSEARVNLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGAVHKMLKLIESSGLDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLTNLNDSKSTSQSQSQVKQDAMRALYNLSICQSNVSVVLETDLVWFLVSTIGDMEVSERSLAILSNLVSTPEGRKAISSVRDAIPILVDALSWTDSPECQEKASYVLMIMAHKAYGDRRVMIEAGIVSSLLELTLVGTTLAQKRASRILECLRIDKGKQVSGSYGGNFNLGVSAPICGSSSSSSKGCLVEEDGIMSEEKKAVKQLVQQSLQSNMIKIVKRANLRHDFVTSTHFASLTSKSLPF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0529 482 Coils Coil 69 116 - -
Gso4g0529 482 Gene3D - 84 247 IPR011989 -
Gso4g0529 482 Gene3D - 248 401 IPR011989 -
Gso4g0529 482 SUPERFAMILY ARM repeat 105 392 IPR016024 -
Gso4g0529 482 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 231 282 IPR000225 GO:0005515
Gso4g0529 482 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 482 - -
Gso4g0529 482 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 482 - -
Gso4g0529 482 SMART arm_5 220 269 IPR000225 GO:0005515
Gso4g0529 482 SMART arm_5 177 219 IPR000225 GO:0005515
Gso4g0529 482 SMART arm_5 270 308 IPR000225 GO:0005515
Gso4g0529 482 SMART arm_5 135 175 IPR000225 GO:0005515
Gso4g0529 482 SMART arm_5 309 351 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0529 Gso-Chr4 5077181 5079027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0529 121 389 U-box Gene Family AT3G46510 37.091 7.51e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0529 - - gmx:100818576 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0529 4 5077181 5079027 Gso6g0525 6 4824826 4826801 GST
Gso14g0955 14 12545713 12549167 Gso4g0529 4 5077181 5079027 PCT
Gso17g1841 17 36992034 36994597 Gso4g0529 4 5077181 5079027 PCT
Gso4g0529 4 5077181 5079027 Gso14g0955 14 12545713 12549167 PCT
Gso4g0529 4 5077181 5079027 Gso17g1841 17 36992034 36994597 PCT