Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0523 ATGGCCTCAACCAACCATAATTCTAGTTTCTCTCATTCCTTCTGTCCCTTAATCGCGAAGCAAACCTTAATTTCTTCCATGGGAATGGAACCAACGTGCGTCGACACTTCGCTCAACCTTAACGTTATTCCCTCTCCACACATCGCGGAAGAAGTTTTGGTTGAAGAGTTGCGGCGTTTAAGTAATGAGAACAAGAGATTAACTGAGACGCTGAAACACGTTTGCGAGAACTATGTTGCTTTGCAGAAACATTTAAATGAATTCAGCCAACTGAGGAACGCAAATTTTGATAAAGAAGCAGGAACAGTACCGTCACTGAAGAGAAAGGCCGAGAGTGTGAATCTGTTTGGTATTAACAACTATACTGAGTGCAGCACCATCACTGAGGAAGAAACATTCAAAAGGCCCAAGCATAGCACCGAGCCAAAGGTTTCCAAAGTTCTTACACGAACAGATGCATCTGATACCGGCTTATATGTGAGGGACGGATATCAGTGGAGAAAATATGGTCAAAAAGTCACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGTTCATATGCCCCAAGCTGCCCAGTGAAGAAGAAGGTGCAAAGAAGTGTAGAAGATCCAAGTGTGTTGGTAACAACTTACGAAGGAGAGCATAACCATGGGCAATAA 663 0.4344 MASTNHNSSFSHSFCPLIAKQTLISSMGMEPTCVDTSLNLNVIPSPHIAEEVLVEELRRLSNENKRLTETLKHVCENYVALQKHLNEFSQLRNANFDKEAGTVPSLKRKAESVNLFGINNYTECSTITEEETFKRPKHSTEPKVSKVLTRTDASDTGLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPSCPVKKKVQRSVEDPSVLVTTYEGEHNHGQ* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0523 220 SUPERFAMILY WRKY DNA-binding domain 159 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g0523 220 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 27 219 IPR044810 GO:0003700
Gso4g0523 220 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0523 220 Pfam WRKY DNA -binding domain 162 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0523 220 ProSiteProfiles WRKY domain profile. 162 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso4g0523 220 Gene3D WRKY domain 144 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso4g0523 220 Coils Coil 50 77 - -
Gso4g0523 220 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 27 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0523 Gso-Chr4 4977891 4979586 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0523 32 218 WRKY Transcription Factor Family AT1G80840 50.754 1.12e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso4g0523 WRKY 2.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0523 - - gmx:100798500 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0523 4 4977891 4979586 Gso6g0518 6 4719582 4721390 GST
Gso14g0896 14 10618324 10621002 Gso4g0523 4 4977891 4979586 PCT
Gso17g1884 17 37720213 37722527 Gso4g0523 4 4977891 4979586 PCT
Gso4g0523 4 4977891 4979586 Gso14g0896 14 10618324 10621002 PCT
Gso4g0523 4 4977891 4979586 Gso17g1884 17 37720213 37722527 PCT