Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0514 ATGAACAGTCACCCTGACCTGAGTAAAATTTCCATTTCCAGAACCTCAAATCAAACTCTTCTATTCCTTTCTCTCATCAATCAATTCAGTTCTCTCCCACTCAGCTCAAGTAACCCTCCCTCAAAAGTCAAAACCGGGTCTTCTGTTTGTCGTCCAATTTCTCTAAAGATAGGAATGGGAATATATCTCAGCAGTCCAAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGACTGTCTTAGATATGGTTTATCGTCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCCACTTCATTTTTTGGTGTCTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCCAAGTTTCTTCATCAACAGGTGCTCAAAAGTGAGACATACTTAACTGGAGATATAGGAACCTCCCTTCAGAAAGCCTTTTTAAGAATGGATGAAATGATGCGTGGTCAAAAGGGATGGAGGGAATTATCAATATTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAAGCAGTGATGGTAATTGCCAAGTTGATGATTGGGGTCTTGAGGAGGGGCCTCATTCTGATTTTGCTGGACCAACTTCGGGAAGCACTGCCTGTGTTGCCGTTATTAGAAACAACCAACTTGTTGTTGCAAATGCTGGTGATTCGCGTTGTGTGATATCTCGGAAGGGCCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGACAGAATCTTAAAAGCTGGTGGTTTTATTCATGCAGGACGAGTTAATGGAAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAGAATAAGTTTCTTCCTGCTGAAAAACAAATTGTAACTGCCAATCCAGACATAAACACTGTTGAGCTTTGTGACGAAGATGAATTTGTGGTGTTAGCTTGTGATGGCATATGGGATTGCATGTCAAGTCAACAACTGGTAGATTTTGTTCGTGAACAATTGCACTTGAAAACGAAACTTTCTGCAGTGTGCGAAAGCGTACTTGACCGGTGTTTGGCACCATCAACTGCTGGTGGTGAAGGATGTGACAATATGACCATGATCGTGGTGCAGTTCAAAAGACCTGCTCAGTCCAGTGCACCAGCAGAAGAGCAATCCTCTTCTTCAAACGGACAAGCTGAACCTGAAACAAAACTAGAGAGAAGTGAAAGTTAG 1260 0.4198 MNSHPDLSKISISRTSNQTLLFLSLINQFSSLPLSSSNPPSKVKTGSSVCRPISLKIGMGIYLSSPKTEKFSEDGENDCLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQVLKSETYLTGDIGTSLQKAFLRMDEMMRGQKGWRELSILGDKINKFTGMIEGLIWSPRSSDGNCQVDDWGLEEGPHSDFAGPTSGSTACVAVIRNNQLVVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKDRILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINTVELCDEDEFVVLACDGIWDCMSSQQLVDFVREQLHLKTKLSAVCESVLDRCLAPSTAGGEGCDNMTMIVVQFKRPAQSSAPAEEQSSSSNGQAEPETKLERSES* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0514 419 Pfam Protein phosphatase 2C 81 162 IPR001932 -
Gso4g0514 419 Pfam Protein phosphatase 2C 214 371 IPR001932 -
Gso4g0514 419 ProSitePatterns PPM-type phosphatase domain signature. 110 118 IPR000222 GO:0043169
Gso4g0514 419 MobiDBLite consensus disorder prediction 388 419 - -
Gso4g0514 419 SUPERFAMILY PP2C-like 61 389 IPR036457 -
Gso4g0514 419 SMART PP2C_SIG_2 86 387 IPR001932 -
Gso4g0514 419 ProSiteProfiles PPM-type phosphatase domain profile. 81 387 IPR001932 -
Gso4g0514 419 PANTHER PROTEIN PHOSPHATASE 2C 56 399 IPR015655 GO:0004722|GO:0006470
Gso4g0514 419 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 56 399 - -
Gso4g0514 419 CDD PP2Cc 81 387 IPR001932 -
Gso4g0514 419 SMART PP2C_4 70 385 IPR001932 -
Gso4g0514 419 Gene3D - 58 388 IPR036457 -
Gso4g0514 419 MobiDBLite consensus disorder prediction 393 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0514 Gso-Chr4 4910158 4916340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0514 59 399 PP2C-type Phosphatase Gene Family AT2G25070 77.126 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0514 K17499 - gmx:100787778 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0514 4 4910158 4916340 Gso6g0508 6 4649763 4655844 GST
Gso14g0886 14 10396805 10402613 Gso4g0514 4 4910158 4916340 PCT
Gso17g1894 17 37860233 37866009 Gso4g0514 4 4910158 4916340 PCT
Gso4g0514 4 4910158 4916340 Gso14g0886 14 10396805 10402613 PCT
Gso4g0514 4 4910158 4916340 Gso17g1894 17 37860233 37866009 PCT