Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0503 ATGGCTTCCAAGCTCTGCGACTCATGCAAATCCGCCACTGCTACCTTGTACTGCCGCCCTGACGCCGCGTTCCTCTGCGGCGCCTGCGATTCTAAGGTCCACGCCGCCAACAAGCTCGCGTCGCGCCACCCGCGCGTGGCGCTCTGCGAGGTGTGCGAGCAGGCCCCGGCGCACGTAACCTGCAAGGCTGATGCCGCCGCGCTCTGCCTTGCCTGCGACCGCGACATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGCATCCCCGTCTCACCGTTCTTCGAGTCCGTACACTCCGTCAAGGCCTCCTCGCCGATCAACTTCCTAGATGACCACCGCTTCTTCTCCGACGCCGATGCTGACGTCAGCACCGAGGAGGCCGAGGCCGCCTCCTGGCTGCTTCCTAATCCGAAGACAGATCTAAATTCCTCTCAGTACTTGTTCTCCGAAACCGAGCCGGTTCCTTACATAGATCTGGATTATGCTGCCGTGGATCCTAAGGCGGAGCAGAAAAGCTCCGCCACCGCCGACGGCGTCGTTCCCGTGCAGAGCAACTTCGAGCCATTCGCCTACGGTTACAAGTACAATACCACTCTCTCACAGTCTCAGATGAGCCAGAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTCGTGCCGGACGGGAACACAATGTCGGAGACATCGAACTGCAGCTACAGCAAGGTGCCTCCGGTGACGGTGACGGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAGGCGAGAGTGTTGAGGTACAGGGAGAAGAGGAAGAACCGTAAGTTCGAGAAGACGATTCGTTACGCATCGAGAAAAGCATATGCGGAGGCGAGGCCAAGGATCAAAGGGAGGTTTGCGAAACGCACTGACCCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGTTGA 930 0.6054 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVALCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERIPVSPFFESVHSVKASSPINFLDDHRFFSDADADVSTEEAEAASWLLPNPKTDLNSSQYLFSETEPVPYIDLDYAAVDPKAEQKSSATADGVVPVQSNFEPFAYGYKYNTTLSQSQMSQSVSSSSMEVGVVPDGNTMSETSNCSYSKVPPVTVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAEARPRIKGRFAKRTDPDPLAGYGVVPSC* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0503 309 Pfam CCT motif 252 294 IPR010402 GO:0005515
Gso4g0503 309 SMART bboxneu5 1 48 IPR000315 GO:0008270
Gso4g0503 309 SMART bboxneu5 49 91 IPR000315 GO:0008270
Gso4g0503 309 CDD Bbox1_BBX-like 5 48 - -
Gso4g0503 309 ProSiteProfiles CCT domain profile. 252 294 IPR010402 GO:0005515
Gso4g0503 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 308 - -
Gso4g0503 309 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Gso4g0503 309 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 308 IPR045281 GO:0009909
Gso4g0503 309 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Gso4g0503 309 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Gso4g0503 309 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0503 Gso-Chr4 4815231 4816636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0503 1 308 C2C2-CO-like Transcription Factor Family AT5G24930 53.476 5.12e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso4g0503 zf-B_box 4.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0503 - - gmx:100794431 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0503 4 4815231 4816636 Gso6g0497 6 4574247 4575569 GST