Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0499 ATGCTCCTCGAGATGGAGAATGATTGTATAAAGGACATGGACATTGAGGTCGTTCCTTCAATGTGGCCTGAAGATATTGGAATGGAGGTTGGGAAGCAATTTAACATAGAAAAGCCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGCCTCATGGAGCTTACAAATTTTACAGAAAAGGGCTCTTCTCAGTTGGCCTACCTAATGAAACAATGGGAGTACAAACAGGCCAATGTTGTGCGTCTCCTCAGGGAAGAACTTGACAATCTAAGCAAGCAAAGGCAGGATGTTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAACGACATGGGGCAGATAAACGTCCAGTTTCTATATTGGATGATGTTTATGATGGTATATGGCAAGACATACCTTGCAGGAGAAGTGATGTTGTGGTTGAAAACAAGAGGAGTGAGATTGATGCTGAGTATGACACTGTCATGTGCTGGAAACAGCGAGCGTTGCATTCAGAGAAGCAGCTGGAGGCAAGTATCCAAAGAGAACAGATACTCGAAGAAAAGTTGCAAGAAAGAATAGCAAACATTGAAAGGCAGTCCTCACCTGTGGAAGAACTCTCCCAGATACTGAAGAGGGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTATTGTTATTGGCCATCAGGACAAAGAATTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATCGGAAAAACCGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAAGCTCAAGAGTTTAAGAGAGAGGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAGCAGGGGAGACAATAGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAACACGAAACTCGATTGGGAGCAAAGACAACTCCTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTCGATCTTTCCAAGGTTGAGTCAGGAGTGATGAAATTGGAAGCTACAAAGTTCAGGCCAAGAGAGGTAGTCAGGCATGTACTCCAGATCGCTGCGGCCTCATTGCAAAAAATACTAACCTTAGAAGGACATGTAGCAGATGATGTGCCTATTGAGGTCATTGGTGATGTTTTAAGAATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCATCAAGTTCACCCATGAAGGCAAAGTTGGAATAAATCTTTATGTTGTGTCAGAGCCTACTTTTGCAAAAGCAGAATGCATCCAAAAGATGACTTCAAGCCATTCAACTATTTCAGTGAATGGTGTAAAGGAAGAGAAATATCTCTCAAAACCTCAAAGTGACAGTGATAGAAATCTTCTTGATGGTTGTCAAAAACATGATGACCATCCCAGCCAAAACCATGCATTCCATGAAGAATGTAGATCTCCTGTCAAAAGTGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTAATTCAGCTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCACACTCGAAAGTATGGTGGTACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCAACTAACAGTTTCTAGCAAAGAACACTATGGTTCTACTTTCACTTTCATACTTCCATACAAGGTTTCAATCGCTTGTGATCATTCTGATGATCTGGATGAGCTCTCTGACGTGGAGAATAATGATGCTGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTTTTCTCATCTAATGGATCTAGCAGGACACATAAGTTATTAACACACAAAATTGGCTACACCAGCTCACATAAGCTTGGTGGATTTTCTGAGAGTTTGTATTCATTCCCCTCCAATGATATCATGTCAAAAGGGACATGTTCAGCTGATGATGCATCTTCTGTGGTTGAGGTTCCAGAGATGTCTGAATCGGCTAGTTCATCTGGTCACAGCCAAAAAACTAAGTCAAATGGAGAAATGTCTGAAGCAAAGTCAAATGAACTACAACAAACAACATGTCAGGGTCATGGGAAGACAAACACAACTTTCCAATGCGTTACAAACAGCAGTGTATCTGAAGTAACCAAATCCACAATAATACCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAGTCCATGATGAAACAATTAGGCCATAGCATAGATGTTGTGAACAATGGAGTGGAAGCCGTACGTGCAGTTCAGCGTCACACTTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGAATGGTCTTCAGGCAACAAAACTGATTCGGACTTTTGAGGAAACAGGCAATTGGGATGCTGCAAGAAATGCTGGAATCGAGCAAAGTGTACAAGATCCAGATTGTGAATGTTCTGTACCATCTACAAAGCGGATCCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCGTTTGTGTCAAAACCTGTGGCATTCCAAAAACTGAAAGAATGTATTGAACAATACCTTGTAAATTTCAGCTAG 2973 0.4097 MLLEMENDCIKDMDIEVVPSMWPEDIGMEVGKQFNIEKPGRDQDMLEEVTIIEEPTIVDFKRLMELTNFTEKGSSQLAYLMKQWEYKQANVVRLLREELDNLSKQRQDVELRKLEILEEHRFEEERHGADKRPVSILDDVYDGIWQDIPCRRSDVVVENKRSEIDAEYDTVMCWKQRALHSEKQLEASIQREQILEEKLQERIANIERQSSPVEELSQILKRADNFLHFILQNAPIVIGHQDKELRYCFIYNHFPSLQEEDIIGKTDVEIFTGAGVKEAQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVRHVLQIAAASLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVSEPTFAKAECIQKMTSSHSTISVNGVKEEKYLSKPQSDSDRNLLDGCQKHDDHPSQNHAFHEECRSPVKSECSMNGDTEEQPNSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHTRKYGGTGLGLAICKQLVELMGGQLTVSSKEHYGSTFTFILPYKVSIACDHSDDLDELSDVENNDAASDDTIESFFQFQPRTLGSLFSSNGSSRTHKLLTHKIGYTSSHKLGGFSESLYSFPSNDIMSKGTCSADDASSVVEVPEMSESASSSGHSQKTKSNGEMSEAKSNELQQTTCQGHGKTNTTFQCVTNSSVSEVTKSTIIPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRHTYDLILMDVCMPVMNGLQATKLIRTFEETGNWDAARNAGIEQSVQDPDCECSVPSTKRIPIVAMTANALSESAEECFANGMDSFVSKPVAFQKLKECIEQYLVNFS* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0499 990 Coils Coil 92 119 - -
Gso4g0499 990 CDD REC_hyHK_CKI1_RcsC-like 844 982 - -
Gso4g0499 990 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Gso4g0499 990 Coils Coil 182 209 - -
Gso4g0499 990 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 454 678 IPR036890 -
Gso4g0499 990 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 987 - -
Gso4g0499 990 Gene3D - 438 684 IPR036890 -
Gso4g0499 990 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Gso4g0499 990 ProSiteProfiles Response regulatory domain profile. 843 986 IPR001789 GO:0000160
Gso4g0499 990 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Gso4g0499 990 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Gso4g0499 990 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Gso4g0499 990 SMART HKATPase_4 483 681 IPR003594 -
Gso4g0499 990 MobiDBLite consensus disorder prediction 776 816 - -
Gso4g0499 990 SMART REC_2 842 982 IPR001789 GO:0000160
Gso4g0499 990 Gene3D PAS domain 214 349 - -
Gso4g0499 990 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 987 - -
Gso4g0499 990 Pfam Response regulator receiver domain 844 912 IPR001789 GO:0000160
Gso4g0499 990 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 679 IPR003594 -
Gso4g0499 990 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Gso4g0499 990 ProSiteProfiles Histidine kinase domain profile. 379 681 IPR005467 -
Gso4g0499 990 MobiDBLite consensus disorder prediction 780 816 - -
Gso4g0499 990 Gene3D - 360 437 - -
Gso4g0499 990 CDD HATPase_EvgS-ArcB-TorS-like 488 678 - -
Gso4g0499 990 SUPERFAMILY CheY-like 842 986 IPR011006 -
Gso4g0499 990 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Gso4g0499 990 Gene3D - 838 987 - -
Gso4g0499 990 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0499 Gso-Chr4 4779610 4786037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0499 588 986 Histidine Kinase Gene Family AT5G10720 53.027 2.94e-130 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso4g0499 HATPase_c 1.6e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0499 - - gmx:100811117 1922.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0499 4 4779610 4786037 Gso6g0484 6 4451926 4457894 GST