Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0490 ATGAATTCCAACATTGATTCAACAGACCATAGCCAGGATCAAAGCAGAAAACGAAACCTACCCGATGCTGATGATTCTCCGGCGCCGAATTTCCACATTGATTCATCAGACCATAACCAGGACCAAAGTAAAAAACGAAAGCAACCCAATGATGAAGATTCTCCATCGCTTGAATCGCCTTGTTCCAACATGAACCCCAGAAGGTATCAGATAGAGGTGTATGAAGTTGCAAGGAGAAGGAACACTATAGCTGTGTTGGATACAGGGTCAGGTAAGACCCTGATTGCTGTAATGCTTATGAAAGAGGTTGGTCAAGCCATCAAGACTAGTGGTGTAAAGAAGCTGATTATTTTCTTGGCTCCCACAGTTCATCTTGTCAATCAGCAATTCAAGAATATAAAATTTCTGACTGATTTTCAAGTTGAGGAATACTATGGGGCTAAAGGAGTTGATACATGGACTTTGAAGACGTGGGAGAAGGAGATTAGTAACAATGATGTTCTGGTTATGACACCCCAGATTCTTTTGGATGCGTTAAGAAAAGCATTCCTGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAACAATTGGCAATCATCCTTATACAAAAATAATGAAGGAATTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCTGTTGGTAAAAAAGGTGTTTCCTCTACTATGGATTGTGAGGATCAGATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGACAGAGATGGATAGGTGTGTCCCATCTGCTAAAGAGAGTTGTAGATATTATGACCAAGCACGATTTTCTGCTTTGAGTTTGAAACCAAAGATTGAAGCCTTGTCGTTCAAGTTTGATGCATTGTTATCAGAAAATCAAAGTAACTATAAGGATGTGGAAAATAAATTTAAGACACTTTCTCAGCGGATGTCCAATGAACTTGCAAAAATTTTACATTGCCTTGAAGATCTTGGGATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAGAATTTTTCCAAATCTGAAGGAGAGTGTGAAATTTACAGAAAAGGTTATCTTCAATGTATAACTTTTCTTGAAGAAGTAATCAAATTAATCGAAGAATCCCTCCATCTTGCTGATAAAAAGATTTTGGAGGTTGATTTTAATTATTCTCAGGCAGAAGATTTGGGATACATATCTCCCAAATTAATTGAACTTATTAAACTCTTTCAGTCATTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACCGCAAAGGTGATCCAAAGATTCGCAAAGACAGTTCCCAATATTTCTCATTTCACAGTTTCCTATTTAACTGGTAACAATACATCGGTTGATGCTCTGGCTCCTAAGAGGCAGAAGGAGATATTGGATTCTTTCCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTTATGTCCAATCTCGTGGAAGATCTAGGCAGGCAAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAGATCAACTCTTTGATATCATTAGGAGTGAGCGGTCCATGACTGATGCATCTATTTATAAAGAACATGAATCTAGTTTAAGGGCATGTATGGTGGGGAAAACAAATGCATACTATGTGGAATCCACTGGAGCATCTTTCACTTTAGATTCTAGTGTTAGTCTCATCCACCGATACTGTGGAACACTCCCTCGAGATAAGTACTCCTGTGTAAAGCCCAATTTTGAGTTTCTGTCTGTGGAAGGGGGTTATCAGTGTAAATTAATATTACCATCTAATTCAGCTTTCCAAACAATAATTGGTCCTTCTGGAAAAGATATGCGTTTGGCAAAGCATCTTGCATGTTTCGAAGCTTGTAAGAAGCTGCATCAAATGGGTGCCTTAAATGAACATTTGGTTCCATTAATTGAAGATTCTTCAGAAGATGACCATATTGTGAAAAATAAAGAATCAAGTTCTGGTGCAGGGACCACAAAAAGAAAGGAGTTACATGGAAAAGCTAACATTCATGCATTAAGTGGTGCATGGGGAGACAAACTCACTAGAGTCAAATTTAATGCGTATAAATTTGAATTCACATGTAATATTGTAAGTGAAATATACTCTGGGTTTGCTCTTTTGATTGAGTCAGAGCTTGATGAGGATGTGGGAAATGTAAATTTAGATCTTTATTTAGTCTCAAAGATTGTGAAAGCTTCCGTCTCTTCATGTGGGCAAGTTGATTTGGATGCTGAACAGATGATGAGAGCAAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGGAGACTGGTCTTGAAGTCCAAATCAGCAGGAGAAAGGGAATTTTTACTTCAGAAAGACACAAACTCATTGTGGAGCCCAAAACACTTGTATTTGCTTCTACCACTAGAGAAATTGAATGATATCTGTGAGGGATCTTTGCAAATTAATTGGTGTGGAATTAATTCTTGTGCTTCTGCTATCAAATTTTTAAGGAGGAAATTTTCTTTGGTCACTGGAGATTGTGATGATAACGGCACAATCACATCACCTCATGATACCAGTTCATCAGAGATGGAATGTGTAGGAGCAAACAAGATTCACTTTGCTAATTGTGTGGTTGATGCTGATAATATAAAAGACAGGGTAGTTTTGGCCATTCACACTGGGAAAATATATTGTATTATTGAGATCGACAGTAACCTATCTGCTGAAAGTCCTTTCTATGGAAACAATGAAAAATCAAAGGAAAGCATTACCTTCTCGGATTATTTCAGCAAAAGTTATGGAATTTCACTGAGACATCCTGGACAGCCTATGTTACGGTTGAAGCAAAGTCATAATCCACACAATCTTCTTTTCAACTTCTATGAGGAAGATGCACGAGACAAGTCATCAAAAATTGGCCCTGCAGCCTCAAAATTGCCAGTGCATGTTCATATTCCTCCCGAGCTTCTATACATTCTTGATGTTAAAAGAGATGTGTTGAAATCACTGTACTTGCTGCCATCTCTGATGTACCGCATTGAATCTTTGATGTTATCTAGTCAGCTTAGAGAAGAGATAGATGGTCAAACTAGCAAGTTCAACATACGTAGCTCACTGATTCTAGAATCACTTACAACTTTGAGATGTAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTGAGTTGTCACCTCTTTCTTAAATATCCTAAAAAACACGAAGGACAATTATCTGCCAGACGATCATCGGCTGTTTGTAACTCAACCCTACATAAACTGGGGACAGATCGCAAATTACAGGGATATATTCGAGACTCTGCTTTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACACCTTGTTTGTTGTGATTGTGGGTTGGAAACCCTTGAAGTGCCTTTAGATGCAAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTTTGCGACAGAGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGATGGTGGACTTTTTGCTTCACTTAATGTGATGAAATGGCTTGGGATTGGTGCTGAACTTGAACTATCATTGGTTGATGAAGCAATCACTGCTGCATCTCTGCGTACATGTTTGCCAAAAGAAAGTGAGATTGCAAGCCTTGAAAAGAAAATTGGGTATGAATTTTCGGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTGAATTTCTAGGTGACTCGGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGACTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGTATTAGTGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATAGTTGGGGCTATACTAATTGATACCAAGCTCAGTCTTGACCAAGTGTGGAACGTTTTCTATTCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCGCTCGGTTATTTTGTAAAAGTAAAAGAAAATTGTGAAAAAGTGGGATCAGCAATGCATGTTGAGGTTAGTGTACAACTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGGCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTTATTTGTTGAAGGATCTTGAGAAGCAGGGAATTTCACATGGTAGTTTCATGTCCAAGGGAAAAAGAGATAATCCTGACCATGTCTATGGTTCATCTCATCTCAAAATGGATTCTAGTATTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAGGCACATATTGGATGAAACTAACTTAACTGCAATTAATTTATCAATTAATATGAAGAAGGGAGGACCGCGGACCACATTATATGAAGTATGTAAGAAATTACAGTGGCCAGTGCCTACATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAGGGGCTGCAAGGAAGCAAGGGACAGAACTGCTTTGTGTCGAAAATTACCTTGTGCATACCCAATTATGGTAATATAGAAAGCAAAGGAGAAGCTAGAAGTGATAAGAAGACCTCCTTTGACTCTGCTGCAGTTCAAATGCTTCTTGAGCTGCAAAGACTGGGAAAAGTTGAAATTGATCCTCTCCCTTCTAGTTAG 5025 0.3869 MNSNIDSTDHSQDQSRKRNLPDADDSPAPNFHIDSSDHNQDQSKKRKQPNDEDSPSLESPCSNMNPRRYQIEVYEVARRRNTIAVLDTGSGKTLIAVMLMKEVGQAIKTSGVKKLIIFLAPTVHLVNQQFKNIKFLTDFQVEEYYGAKGVDTWTLKTWEKEISNNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRTIGNHPYTKIMKEFYHQANEKPKIFGMTASPVGKKGVSSTMDCEDQISELESILDSQRYTVEDRTEMDRCVPSAKESCRYYDQARFSALSLKPKIEALSFKFDALLSENQSNYKDVENKFKTLSQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKSEGECEIYRKGYLQCITFLEEVIKLIEESLHLADKKILEVDFNYSQAEDLGYISPKLIELIKLFQSFGESSQVLCLIFVDRIITAKVIQRFAKTVPNISHFTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFVVMLERGNLKQRDQLFDIIRSERSMTDASIYKEHESSLRACMVGKTNAYYVESTGASFTLDSSVSLIHRYCGTLPRDKYSCVKPNFEFLSVEGGYQCKLILPSNSAFQTIIGPSGKDMRLAKHLACFEACKKLHQMGALNEHLVPLIEDSSEDDHIVKNKESSSGAGTTKRKELHGKANIHALSGAWGDKLTRVKFNAYKFEFTCNIVSEIYSGFALLIESELDEDVGNVNLDLYLVSKIVKASVSSCGQVDLDAEQMMRAKCFHELFFNGLFGRLVLKSKSAGEREFLLQKDTNSLWSPKHLYLLLPLEKLNDICEGSLQINWCGINSCASAIKFLRRKFSLVTGDCDDNGTITSPHDTSSSEMECVGANKIHFANCVVDADNIKDRVVLAIHTGKIYCIIEIDSNLSAESPFYGNNEKSKESITFSDYFSKSYGISLRHPGQPMLRLKQSHNPHNLLFNFYEEDARDKSSKIGPAASKLPVHVHIPPELLYILDVKRDVLKSLYLLPSLMYRIESLMLSSQLREEIDGQTSKFNIRSSLILESLTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSSAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHLVCCDCGLETLEVPLDAKFHTEDPKVVVGKFCDRGHRWMCSKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGAELELSLVDEAITAASLRTCLPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCYERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLLSQISEYVKVISESDPRSLPSISAPKALGDVVESIVGAILIDTKLSLDQVWNVFYSLLSPIVTPDKLELPPFRELNELCDSLGYFVKVKENCEKVGSAMHVEVSVQLPNALLVREGKGANKKTAKGEAAFYLLKDLEKQGISHGSFMSKGKRDNPDHVYGSSHLKMDSSILIEEHSSEPASHKRHILDETNLTAINLSINMKKGGPRTTLYEVCKKLQWPVPTFDSTEYKDRSLFESCEGLQGSKGQNCFVSKITLCIPNYGNIESKGEARSDKKTSFDSAAVQMLLELQRLGKVEIDPLPSS* 1675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0490 1674 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 248 IPR014001 -
Gso4g0490 1674 Pfam PAZ domain 921 1055 IPR003100 GO:0005515
Gso4g0490 1674 CDD DEXHc_dicer 64 262 - -
Gso4g0490 1674 SMART helicmild6 447 534 IPR001650 -
Gso4g0490 1674 Gene3D paz domain 908 1032 - -
Gso4g0490 1674 SMART riboneu5 1287 1438 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 SMART riboneu5 1078 1251 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 CDD SF2_C_dicer 410 542 - -
Gso4g0490 1674 Gene3D Ribonuclease III domain 1060 1242 IPR036389 GO:0004525|GO:0006396
Gso4g0490 1674 Coils Coil 305 332 - -
Gso4g0490 1674 Gene3D - 61 298 IPR027417 -
Gso4g0490 1674 Gene3D - 1441 1510 - -
Gso4g0490 1674 Gene3D Ribonuclease III domain 1268 1438 IPR036389 GO:0004525|GO:0006396
Gso4g0490 1674 Gene3D - 405 568 IPR027417 -
Gso4g0490 1674 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 414 575 IPR001650 -
Gso4g0490 1674 SMART PAZ_2_a_3 900 1058 IPR003100 GO:0005515
Gso4g0490 1674 ProSitePatterns Ribonuclease III family signature. 1308 1316 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 CDD RIBOc 1078 1242 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 ProSiteProfiles PAZ domain profile. 920 1034 IPR003100 GO:0005515
Gso4g0490 1674 ProSiteProfiles Ribonuclease III family domain profile. 1272 1415 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 601 691 IPR005034 GO:0016891
Gso4g0490 1674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 542 IPR027417 -
Gso4g0490 1674 Pfam Dicer dimerisation domain 601 686 - -
Gso4g0490 1674 SUPERFAMILY RNase III domain-like 1271 1435 IPR036389 GO:0004525|GO:0006396
Gso4g0490 1674 SUPERFAMILY RNase III domain-like 1072 1249 IPR036389 GO:0004525|GO:0006396
Gso4g0490 1674 PANTHER DICER-RELATED 45 1665 - -
Gso4g0490 1674 Pfam Ribonuclease III domain 1308 1414 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 Pfam Ribonuclease III domain 1096 1231 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 Gene3D Dicer dimerisation domain 596 694 IPR038248 -
Gso4g0490 1674 CDD RIBOc 1288 1436 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 Pfam Helicase conserved C-terminal domain 427 531 IPR001650 -
Gso4g0490 1674 ProSiteProfiles Ribonuclease III family domain profile. 1059 1231 IPR000999 GO:0004525|GO:0006396
Gso4g0490 1674 SUPERFAMILY PAZ domain 921 1034 IPR036085 GO:0005515
Gso4g0490 1674 SMART ultradead3 62 261 IPR014001 -
Gso4g0490 1674 Pfam Type III restriction enzyme, res subunit 65 230 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gso4g0490 1674 Gene3D - 1583 1662 - -
Gso4g0490 1674 MobiDBLite consensus disorder prediction 1 64 - -
Gso4g0490 1674 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1486 1509 IPR014720 -
Gso4g0490 1674 MobiDBLite consensus disorder prediction 37 53 - -
Gso4g0490 1674 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 45 1665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0490 Gso-Chr4 4635727 4655786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0490 458 531 Eukaryotic Initiation Factors Gene Family AT3G19760 39.189 4.44e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0490 K11592 - gmx:100806831 3298.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0490 4 4635727 4655786 Gso6g0475 6 4341344 4347813 GST