Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0481 ATGGCGTTTCGGTTTGGACTACTCCTTCTGTTTTCTCTCCTTTGTTTGGATTCAATTGGTTCGGTGAATTCACACGACGGAGAAACGTTGTTGGAGATAAAGAAGTCGTTCAGTGATGTAGATAACGTTCTGTATGACTGGACAGACTCACCTTCTTCAGATTATTGTGTTTGGAGAGGGGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTCAATCTTTCAGGGTTGAATCTTGAGGGCGAAATTTCACCTGTAATAGGGAGACTTAACAGCTTGGTCTCTATTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAGCTTGGTGATTGTTCCTCTTTGAAAAGCATAGACTTGTCATTTAATGAGATTCGGGGGGATATACCGTTTTCGGTTTCGAAGATGAAACAGCTGGAAAATCTAATTTTGAAAAATAATCAGCTAATTGGACCAATTCCTTCAACTCTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTATATACTGGAATGAAGTTTTACAATATCTTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTACTTTGACGTGAGAAACAATAGCTTGACAGGCACTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCTGTCATTGCAAGGCAATAAATTCTTGGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTAGATTTGAGTTGTAATATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTGTATTTGCATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAATATGACAAACCTTCACTATTTGGAATTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTCATGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAGCTTGGAGAGTATGACCTATCTTAATCTTTCTTCAAACAATCTTCAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGATATTGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTGAGACTAGAAAAGAACAAATTATCCGGGGACGTGTCTTCACTTTTAAATTGCTTTAGTCTTTCTCTACTTAATGTCTCTTATAACAACCTAGTTGGTGTTATTCCCTCAAGCAAGAATTTTTCCAGGTTTTCCCCTGACAGTTTTATTGGAAATCCTGGTCTTTGTGTCGATTGGCTGGATTCGTCTTGTCTTGGGTCTCACTCTACAGAGCGAGTTACCTTGTCCAAGGCAGCTATCCTAGGAATTGCAATAGGCGCCCTTGCGATTCTTTTTATGATATTGCTAGCAGCTTGCCGACCACACAATCCAGCTTCCTTCTCTGATGATGGATCTTTTGACAAACCAGTTAATTACTCACCTCCAAAGCTAGTGATTCTTCACATGAATATGGCACTTCATGTGTATGATGATATCATGAGGATGACCGAAAACCTAAGTGAGAAGTATATAATTGGGTATGGTGCATCGAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCGGTGGCTATCAAGAAGCTCTATTCTCACTATCCGCAATATTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGGAATCTGGTCAGTCTCCAAGGCTACTCATTGTCTCCATACGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGTATATGGGATCTTCTACATGGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCACTTGGATCGGCCCAAGGACTTTCTTATCTGCACCACGATTGCAGTCCACGTATCATTCACAGGGATGTGAAATCATCTAATATTTTACTTGACAAAGATTTTGAGCCCCATCTCACCGATTTTGGCATTGCAAAAAGTCTCTGTCCATCTAAGACCCACACTTCAACTTACATAATGGGCACAATTGGCTATATAGATCCAGAGTATGCTAGGACTTCTCGCCTCACTGAGAAGTCTGATGTGTATAGCTATGGTATTGTATTGCTTGAGCTCCTGACTGGAAGGAAAGCTGTTGACAATGAATCAAACCTCCACCATCTGATTTTGTCCAAGACAGCTAATGATGGTGTAATGGAAACCGTTGATCCAGATATTACTGCTACATGCAAGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTTTTATGCACAAAGAAGCAACCAGTTGATAGGCCTACAATGCATGAGGTGACTCGTGTGCTGGCAAGCCTTGTGCCATCCATCACTCCACCAAAACAAACTGACCAAACACAAGTAGTGCTATCTGATTCACAGCCATCTGCTAAAATGCAATGCTACAAGGATGAATATGCAAATCTTACAACTCCACACCTTGTGAACTGTCCATCCATGAGCACCTCTGATGCCCAACTCTTCCTCAAATTTGGAGAAGTAATATCACAAAACAGTCACTGA 2958 0.4067 MAFRFGLLLLFSLLCLDSIGSVNSHDGETLLEIKKSFSDVDNVLYDWTDSPSSDYCVWRGVTCDNVTFNVVALNLSGLNLEGEISPVIGRLNSLVSIDFKENRLSGQIPDELGDCSSLKSIDLSFNEIRGDIPFSVSKMKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGTIPENIGNCTTLGVLDLSYNKLTGEIPFNIGYLQVATLSLQGNKFLGHIPSVIGLMQALTVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGLIPPELGNMTNLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPVPDNLSSCKNLNSLNVHGNKLSGTVPSAFHSLESMTYLNLSSNNLQGSIPIELSRIGNLDTLDISNNNIIGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNIISLRLEKNKLSGDVSSLLNCFSLSLLNVSYNNLVGVIPSSKNFSRFSPDSFIGNPGLCVDWLDSSCLGSHSTERVTLSKAAILGIAIGALAILFMILLAACRPHNPASFSDDGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQYLKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSIWDLLHGPTKKKKLDWDLRLKIALGSAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKTHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANDGVMETVDPDITATCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLASLVPSITPPKQTDQTQVVLSDSQPSAKMQCYKDEYANLTTPHLVNCPSMSTSDAQLFLKFGEVISQNSH* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0481 985 SMART LRR_typ_2 402 426 IPR003591 -
Gso4g0481 985 SMART LRR_typ_2 330 354 IPR003591 -
Gso4g0481 985 SMART LRR_typ_2 211 235 IPR003591 -
Gso4g0481 985 SMART LRR_typ_2 450 473 IPR003591 -
Gso4g0481 985 SMART LRR_typ_2 474 497 IPR003591 -
Gso4g0481 985 SMART LRR_typ_2 91 115 IPR003591 -
Gso4g0481 985 SMART LRR_typ_2 163 187 IPR003591 -
Gso4g0481 985 SMART LRR_typ_2 282 306 IPR003591 -
Gso4g0481 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 6 972 - -
Gso4g0481 985 SMART serkin_6 649 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0481 985 Pfam Protein kinase domain 652 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0481 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672|GO:0006468
Gso4g0481 985 Gene3D Ribonuclease Inhibitor 186 296 IPR032675 -
Gso4g0481 985 Gene3D Transferase(Phosphotransferase) domain 1 725 939 - -
Gso4g0481 985 ProSiteProfiles Protein kinase domain profile. 649 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0481 985 Gene3D Phosphorylase Kinase; domain 1 631 724 - -
Gso4g0481 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 972 - -
Gso4g0481 985 SUPERFAMILY L domain-like 50 301 - -
Gso4g0481 985 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Gso4g0481 985 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Gso4g0481 985 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Gso4g0481 985 SUPERFAMILY Protein kinase-like (PK-like) 626 915 IPR011009 -
Gso4g0481 985 ProSitePatterns Protein kinases ATP-binding region signature. 655 678 IPR017441 GO:0005524
Gso4g0481 985 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Gso4g0481 985 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Gso4g0481 985 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Gso4g0481 985 Gene3D Ribonuclease Inhibitor 297 569 IPR032675 -
Gso4g0481 985 SUPERFAMILY L domain-like 260 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0481 Gso-Chr4 4537053 4547994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0481 93 919 Receptor kinase-like Gene Family AT5G07180 67.150 0.0 1127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Gso4g0481 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0481 K20718 - gmx:100804875 1914.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0481 4 4537053 4547994 Gso6g0462 6 4239169 4247043 GST