Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0472 ATGGTGCTGAAAGGCGGTGAAGTAAGCATGTCTGAGAAGAAAAGGGAAGTGATGGTGGCGATTCCACATGAGGGTGGTGCTGAATCTTTGATGCCAAAGCAGCAGAGCAGGGTGAATTCGCCACACAGAGCATTAAACGACAACGAGGTTGCTGCAAAGTCGCCACCTTTGAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTCCCACTTCCAATGCCATCCTCACTCGGAGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAATCTTACCCCATTGATGGGACCCTTTTGGAAGAGAATGCTACCTCAACTTTGCAAGAAAATTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAACCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGGTCACTCCCAAGACGCCGCTGATGGCATCTCCCGGGCTGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACATGCGTAGTAGGAGACTGACTGTTAAGGTTTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAACTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGCTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGTGACCTTTTGTGGCATGTTGGTTACCAGATGGTTCATGCTCATTGTGGTTTTCTTGATTGAGACCAACTTTTTGTTGAGGAAAAAGGTGCTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTAGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGTGGGGTCCACCGAACTGAATTGGCGTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAAATCTTGGCATCGAATTTCCACGTTAAGTCTTTTTTTGATCGAATTCAAGAATCTCTCTTCCATCAGTACATTCTGCAGAATCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCATACAGTGTTGGTCGCTTTAGTTTCAGGAGTACAGATGGTAAAGGCGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCGGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTAGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTTGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTACTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAAGAACGCAGAGCATTAGCACATGCCTTGAGTGACACCAAAACAGCTGTAAAACAACTAAACAAGCTCGTGACAGTACTCCTAGTAGTGGTGACCATAATTGTGTGGCTTCTACTAATGGAGATTGCGACAACAAAAGTACTTGTATTCCTCTCATCGCAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAACAATGAAAAGGTGTATTATCCAAATTCTTTACTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCGATTGATTTTATGACACCAGCCGAGAAGATTGGGGAACTGAAAGAAAAAATAAAGAGGTACCTGGAGAGAAATCCACAATACTGGCATCCCAATCATGGCTTAGTAGTGAAGGAGCTTGAAGATGTAAACAAGATTAAGATGGGTCTTAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAACTGGTGATGGAATTAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTTAGACATATTGAATCAAACTCAAGTTTGCTCAATATATGA 2301 0.422 MVLKGGEVSMSEKKREVMVAIPHEGGAESLMPKQQSRVNSPHRALNDNEVAAKSPPLNCASPEIRFMPSPNKPPKVPTSNAILTRRKSLTRSVYSKPKSRFGEQSYPIDGTLLEENATSTLQENLTVGSPYKASPNNNNKPGTVNRTFSILSVVTPKTPLMASPGLAGEDFDEIIYKKVELSKNMRSRRLTVKVLFEWFVFVCIASSLVASLTVGKLKRTEIWGLGFWRWCVLVMVTFCGMLVTRWFMLIVVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQNLSGPPLVEEAEKVGASYSVGRFSFRSTDGKGGTKKETIDIAKLHRMKQEKVSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVTIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSLLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGELKEKIKRYLERNPQYWHPNHGLVVKELEDVNKIKMGLNVTHTMNFQEFGEKTKRRTELVMELKKIFEELNIRYNLLPQGIHLRHIESNSSLLNI* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0472 766 Pfam Mechanosensitive ion channel 538 744 IPR006685 GO:0016020|GO:0055085
Gso4g0472 766 Gene3D - 598 647 IPR023408 -
Gso4g0472 766 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 12 754 - -
Gso4g0472 766 MobiDBLite consensus disorder prediction 23 42 - -
Gso4g0472 766 PIRSF Memb_At2g17000 9 765 IPR016688 -
Gso4g0472 766 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 12 754 IPR016688 -
Gso4g0472 766 SUPERFAMILY Sm-like ribonucleoproteins 588 647 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0472 Gso-Chr4 4445536 4449488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0472 52 754 Mechanosensitive Ion Channel Family AT5G12080 60.367 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0472 K22048 - gmx:100803107 1483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0472 4 4445536 4449488 Gso6g0452 6 4175602 4179842 GST