Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0469 ATGGATAATAATAACAACAACAACATCAACTCCTCCGTGTTTGTTTCATACGTATGTCGAGATCCATTTGTCAGTCCACTTCTCGATAACTTTAACGAACCGGATCCTGCACTTGTCTATTTATTACCCGAACCGAACCTACGAAATGATGAACAGCAGCCCCTGCAGGGTCATGTTTCCTCCACGGATTCAACGATCCATGATCAATCCCACCATTATTGCAATGACAATTTTACCATCGGAGGAGGAGTATTTCCTAACTATGAATTCGTAGAGGGGTCTTCCAAGAACAAGCGTAAATATCCCTTCACGGATACGGATATTGAAGATCAATCCTTCATGCATGACTTTGAAGCGGGTCCATCCAATCTGAATCAGCCAGCAAGTGGGAATATGGGTCCTCGTAATTGGCCTCCTATGCCAAGGCCATTCTTTTGCACTTGCTGCCAAGTTCTAAGACAGACAATTCACACCAATGGTACTGATTTTGAGAGACTAGAAATACATGGAAGGATCGGATTGATCAGCCACATAATAATTCAGAATCAGAGTATTACACCGGGTGGTAGATCATGTGACAATTATCAAATGATTGATTTCACCAACGGAAGCCCTGCAGAAGTTAAGGGTTTCCTTGAAGATTACATTGCACGGAAGGATAAATTAGGGTACATTATTGCGGAAGAATCTTTTTCTGAGTTTTATGAAGCCGTCTGCACAAAACTTGATTGGGTTGGAAAACGCACTAATAACGAAGACGATGATTTGACTCCACAAAATGTGGAGGAAGAACCTGAGCCTGAGCCTGAGCCGCCTAAGGAAAGAAGGCGTAAACGTAGTCGCAAAGACCAGTCAGATAGGATAAATAGTATGACATTGGATGATTTGAGTGGCGTGTTCCACATAACTATGAAGGCTGCAAAGAATGTATTAGACATGTCTGTTACTGCAATTAAGTCAATTTGCCGCAAGTGTCGTTTATATAAATGGCCCCACAGACAGTTGCAACCCCTAGCGAGGAGGTTGAAAGTGCTGAAAAGAGCATTGGAATCTTCACAAGATCCAGTGGTAATACAAACAACTAGCATGGAAGTTCGAAGAATTAAACAACACATGACTCAGTTGTGTGGTGGAGTTACCCCAACGGGTATAGAAATTCCTGAAGTTGAAGAATAG 1176 0.4218 MDNNNNNNINSSVFVSYVCRDPFVSPLLDNFNEPDPALVYLLPEPNLRNDEQQPLQGHVSSTDSTIHDQSHHYCNDNFTIGGGVFPNYEFVEGSSKNKRKYPFTDTDIEDQSFMHDFEAGPSNLNQPASGNMGPRNWPPMPRPFFCTCCQVLRQTIHTNGTDFERLEIHGRIGLISHIIIQNQSITPGGRSCDNYQMIDFTNGSPAEVKGFLEDYIARKDKLGYIIAEESFSEFYEAVCTKLDWVGKRTNNEDDDLTPQNVEEEPEPEPEPPKERRRKRSRKDQSDRINSMTLDDLSGVFHITMKAAKNVLDMSVTAIKSICRKCRLYKWPHRQLQPLARRLKVLKRALESSQDPVVIQTTSMEVRRIKQHMTQLCGGVTPTGIEIPEVEE* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0469 391 Pfam RWP-RK domain 290 336 IPR003035 -
Gso4g0469 391 PANTHER PROTEIN RKD4 31 377 IPR044607 GO:0003700
Gso4g0469 391 ProSiteProfiles RWP-RK domain profile. 270 358 IPR003035 -
Gso4g0469 391 PANTHER RWP-RK DOMAIN PROTEIN 31 377 - -
Gso4g0469 391 MobiDBLite consensus disorder prediction 266 288 - -
Gso4g0469 391 MobiDBLite consensus disorder prediction 250 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0469 Gso-Chr4 4419561 4421602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0469 250 353 NLP Transcription Factor Family AT1G64530 30.769 7.52e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso4g0469 RWP-RK 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0469 - - gmx:102665948 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0469 4 4419561 4421602 Gso6g0446 6 4132176 4134192 GST