Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0468 ATGGAGATGGAGGCAGGAGGAGCTCAATCTCAACGCTACAACTACAACTACGACTACAATCCCTGCTCTGTTATCACCAGTGTGATCCAGCTTTGTGATACAAAGATGGAAAATCTTTTCCTTTATGGATTTCCTAGGGAACTGTGGGAAGTCAATGTGCCTCCAGACCTTCTAGTGCCAACATTGGGTATTAACTTTGACAGAGACGGGAAGCAAAATAAGGACAGGCTATCCTTGGTTGCTATGCACAGTGATGCATGGTTACTTTCTGTGGCTTCGTTTTTTGGTGCTATATTTGGGTTTGATAAGGCTAACAGGAAGCAACTGTTTGATATGATAAATGATCTTCCAACAATAAATGAGGTTGTTACAGGGATGACCAAGAAGCAAGGAAAGGAAAAGTCATCAGTTCCTAATCATAGCAAACCTAAATCAAACTCTAAGGGTAAAGGGAGGGGTTCTAAACCTCAAGGTAAGTATTCGAAAGCGATGCAATCAAAGGATGAAGATGAAGATGATTTAGAAGTGGACGATGAAGAGGAGCATGGAGAAACACTTTGTGGGACATGTGGATTGAACTATGCAGGTGAAGCTTCTGAGTTCTCGATTTGCTGTGACAATTGTGACAAGTGGTTTCATGGAAAATGTGTGAAGATTACTCCTGCTAGGGTTGAGGGTATCAAGCGGTACAAATGTCCATCTTGGAGCAGCAAGAGAGCTCGACCTTGA 729 0.4252 MEMEAGGAQSQRYNYNYDYNPCSVITSVIQLCDTKMENLFLYGFPRELWEVNVPPDLLVPTLGINFDRDGKQNKDRLSLVAMHSDAWLLSVASFFGAIFGFDKANRKQLFDMINDLPTINEVVTGMTKKQGKEKSSVPNHSKPKSNSKGKGRGSKPQGKYSKAMQSKDEDEDDLEVDDEEEHGETLCGTCGLNYAGEASEFSICCDNCDKWFHGKCVKITPARVEGIKRYKCPSWSSKRARP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0468 242 Pfam PHD-finger 187 234 IPR019787 -
Gso4g0468 242 SUPERFAMILY FYVE/PHD zinc finger 172 235 IPR011011 -
Gso4g0468 242 PANTHER CPG BINDING PROTEIN 27 242 IPR045104 GO:0006355|GO:0042393
Gso4g0468 242 Pfam Alfin 26 124 IPR021998 GO:0006355|GO:0042393
Gso4g0468 242 SMART PHD_3 186 236 IPR001965 -
Gso4g0468 242 MobiDBLite consensus disorder prediction 128 179 - -
Gso4g0468 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Gso4g0468 242 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 27 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0468 Gso-Chr4 4415181 4416860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0468 25 241 Alfin-like Transcription Factor Family AT3G42790 58.559 7.54e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso4g0468 Alfin 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0468 - - gmx:100801524 455.292