Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0460 ATGGAGGATCTCGAGGAGGAAGAGAACGGAGCGGAGGAGGTGTTGGGGTCAAGCTTGACCATGGAGAAAGTGGCGGCTGCGAAGAAGTTCATTGAGAATCATTATAGGGCTCAGATGAAGAACATCCAAGAGAGGAAGGAGAGGCGCTGGGTTTTAGAAAGAAAATTGGCATCATCAGATGTGCCAAATGAGGAGCGGATCAACCTCATCAAAGATTTAGAGAGGAAGGAGACTGAATATATGCGATTGAAAAGACACAAGATTTGTGTTAATGATTTTGAACTTTTGACCATCATTGGAAGGGGGGCTTTTGGGGAGGTTAGACTGTGCCGGGAGAAGAAATCTGGAAATATTTATGCTATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAGAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAATTTGCTGGCCGAAGTTGCCAGTCATTGCATTGTGAAACTTTACTACTCATTTCAGGATGCTGAGTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGACGTTATGACTCTGCTGATGAGGGAAGACACCTTAAGTGAAAATGTTGCTAGATTTTACATTGCACAAAGTGTTCTGGCCATAGAATCTATTCACAAACACAATTACATTCACAGAGATATTAAACCTGATAACCTTCTTCTGGATAAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTCTGTAAGCCTCTGGATTGTATAGCCTTGTCTACACTGCATGAAAATCAGACCATAGATGATGAAACTTTGGCAGAACCAATGGATGTTGATGATGCGGACAATCGAAGTAGCTGGAGAAGTCCACGTGAACAGCTTCAACATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACAGTGGGGACACCAGACTACATTGCTCCTGAAGTACTTTTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTGGTTGGTTACCCACCATTTTACTCCGATGATCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAAATCATTTAAGATTTCCAGATGATGCCCAGTTAACACTTGAGGCTAAGGATCTAATTTATAGGTTGCTCTGTGATGTTGATCATAGGTTAGGTACTCGAGGGGCCATTGAAATAAAGGCTCATCCTTGGTTCAAGGGTGTGGATTGGGATAAACTGTATGAAATGGAGGCAGCATTTAAACCTCAAGTCAATGGGGAACTGGATACCCAAAACTTCATGAAGTTTGATGAGGTTGATCCACCAACAGCAGCAAGAACCGGGTCTGGATCCTCACGAAAGATGCTAACTACCAAAGATCTAAGTTTCGTTGGTTATACTTACAAGAATTTCGATGCTGTAAAGGAAGGGCTCCGTCAATCTTTTGGTGATTCCATGCAAGAGTATGCTTCTAAACGGGCAGCTGAAGAAACAAGTTTACAAATGCTTGCATCCTCTGGAGATCCAATGGTTCCATAA 1512 0.4233 MEDLEEEENGAEEVLGSSLTMEKVAAAKKFIENHYRAQMKNIQERKERRWVLERKLASSDVPNEERINLIKDLERKETEYMRLKRHKICVNDFELLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLRRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDVMTLLMREDTLSENVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCIALSTLHENQTIDDETLAEPMDVDDADNRSSWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPDDAQLTLEAKDLIYRLLCDVDHRLGTRGAIEIKAHPWFKGVDWDKLYEMEAAFKPQVNGELDTQNFMKFDEVDPPTAARTGSGSSRKMLTTKDLSFVGYTYKNFDAVKEGLRQSFGDSMQEYASKRAAEETSLQMLASSGDPMVP* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0460 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gso4g0460 503 SMART serkin_6 93 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0460 503 CDD STKc_NDR_like 91 460 - -
Gso4g0460 503 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 484 - -
Gso4g0460 503 ProSiteProfiles Protein kinase domain profile. 93 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0460 503 SUPERFAMILY Protein kinase-like (PK-like) 90 443 IPR011009 -
Gso4g0460 503 Pfam Protein kinase C terminal domain 415 459 IPR017892 GO:0004674|GO:0005524|GO:0006468
Gso4g0460 503 SMART pkinase_C_6 397 461 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso4g0460 503 Pfam Protein kinase domain 94 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0460 503 Pfam Protein kinase domain 288 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0460 503 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 13 484 - -
Gso4g0460 503 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Gso4g0460 503 Gene3D Transferase(Phosphotransferase) domain 1 179 413 - -
Gso4g0460 503 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524
Gso4g0460 503 ProSiteProfiles AGC-kinase C-terminal domain profile. 397 469 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0460 Gso-Chr4 4357173 4366704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0460 1 502 AGC Kinase Gene Family AT4G33080 80.392 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Gso4g0460 Pkinase 8.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0460 K08790 - gmx:100815717 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0460 4 4357173 4366704 Gso6g0439 6 4077444 4086530 GST