Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0446 ATGAAGGGAGTTACAGTGAAAGTTGAAGAAACAATGGCGTATGCTAATGCTGCTTCAACTAGCCCAACAACATCTTCAAACCTCTCCCCGCAACCCATGGAAGGGTTGCACGAGGTGGGTCCCCCTCCGTTTCTCACCAAAACCTTCGACGTGGTGGAAGACCCATCCACCAACGACATCGTCTCGTGGAGCAGATCCCGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCTACCACCATCCTGCCTCGCTACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACGGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTTTTGGCGGGGCAGAGGCAATTGTTGAAGACGATAAAGAGGAGGAGGCACGTGACAGTGACACAGACACAGTCACACGAGGGAGGAAGTGGGGCTTGTGTTGAATTGGGGGAGTTTGGGTTGGAAGGTGAGATGGAGAGGTTGAGGAGAGACAGGACAGTGTTGATGGCTGAAATTGTGAGGTTGAGACAACAACAGCACAACTCGAGGGAGCAATTGTTGTCCATGGAGACTAGGTTGCAAGCCACTGAGAAGAAACATCAACAGATGATGAATTTTCTGGCTAAAGCACTCAACAACCAGGCTTTTATTCAGCAGTTTCTTCAAAGGAATGCTCAGAACAAAGAGTTGCAAGGTGCGAGAAGAAAGAGGAGACTAACTGCTACCCCAAGTGTGGAGAATTTGCAGCAAGATCATTTCGCTTTGTCAATTGAAGAAGGATCGGCTACTATTGAGTCACAGATGGAGTCTTTTTTCTCAGCTGCGTGTAATGATCCGTTAGAATCAAACAGTGAACTCAAAGACCCAATATTGAGTTCAGTTCCAGTTGCAAGTGGGAGTAATTTGGGGGAGGTGAGTGATTCTGTTTGGGAGGACTTGCTGAACCAAGACTTGGTTGCTGGGGACCCTGAAGAGGAAGTTGTGATTGGTGATTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGATTGCGGATGCTGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCACATGGGTTATCTTGGGTCCAAACCGTAG 1119 0.4745 MKGVTVKVEETMAYANAASTSPTTSSNLSPQPMEGLHEVGPPPFLTKTFDVVEDPSTNDIVSWSRSRNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLAGQRQLLKTIKRRRHVTVTQTQSHEGGSGACVELGEFGLEGEMERLRRDRTVLMAEIVRLRQQQHNSREQLLSMETRLQATEKKHQQMMNFLAKALNNQAFIQQFLQRNAQNKELQGARRKRRLTATPSVENLQQDHFALSIEEGSATIESQMESFFSAACNDPLESNSELKDPILSSVPVASGSNLGEVSDSVWEDLLNQDLVAGDPEEEVVIGDFSQVDVPVEDLIADADEWSEDLQNLVDHMGYLGSKP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0446 372 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0446 372 Gene3D - 37 134 IPR036388 -
Gso4g0446 372 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0446 372 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 323 IPR027725 -
Gso4g0446 372 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0446 372 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0446 372 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0446 372 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso4g0446 372 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Gso4g0446 372 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 17 323 - -
Gso4g0446 372 Coils Coil 344 364 - -
Gso4g0446 372 Coils Coil 163 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0446 Gso-Chr4 4212716 4214814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0446 30 372 HSF AT2G26150 52.601 7.36e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso4g0446 HSF_DNA-bind 3.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0446 K09419 - gmx:100794605 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0851 14 9476199 9479906 Gso4g0446 4 4212716 4214814 PCT
Gso17g1930 17 38407692 38411282 Gso4g0446 4 4212716 4214814 PCT
Gso4g0446 4 4212716 4214814 Gso14g0851 14 9476199 9479906 PCT
Gso4g0446 4 4212716 4214814 Gso17g1930 17 38407692 38411282 PCT