Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0440 ATGACTTCTGTTTCACTGAACCCCAACCCCCCATGCCCTACGATACAAGATCAAAGTCAACTCTTCATTTCTGCGAATAATCACGAATCAACTTCTCTCTCATGTTGCACCTTCTTTCACATACTCGATCAAAGCCAAACCAAAGATATCAGAGATTTAAGACATGGTCATCAACAGGATGGGAAGCTTGTATTTCATATTGGACCATCAAACAACAACAACCAAGTGTGCAATTCATCCTCCGTTAAACTTCAACCTAAGCCCGTTAAGGCAGATTCAAGCAGCGAGTGTGGCCACCATAACGTTTCCTTGTACAAAATAGAGGACGAAGAGAACAAAAGAGATCATGATTATGAAAAATGGATGTCTTCAACTGCGAGGTTAACGAGAAAAATGATGAGGCTACCTAGCACTAGCAGCGATCTGGCCACAAAGAAAGCATTGAATAATATTACAAGGGTTTGTGCGGATTGCAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGCGGCATTCGACAGAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGTAAATGGTTTTGCTCCTTCCGTGAATTCATCTTCTACAAAGATCAGAGTGCATCACAAGGAAAAGAAGTCTCGTACAAACCATTTTGCACGGTTCAGGCTTAAGTGCAAGTTGGCAACTACTAGTACTGCTGAAGGAACATCTCAGCAGGAGAACGTGAAGATTGATTTGAACGATTTTGGTTTGAGTTTGAGGGATAGTTCGGCTTTGAAGCAGCAAGTGTTTCCAATAATGGATGAAGTAGCTCAGGCAGCGATGCTTCTCATGGATTTATCTTGCGGCTTTGTTTACTGTTAA 879 0.43 MTSVSLNPNPPCPTIQDQSQLFISANNHESTSLSCCTFFHILDQSQTKDIRDLRHGHQQDGKLVFHIGPSNNNNQVCNSSSVKLQPKPVKADSSSECGHHNVSLYKIEDEENKRDHDYEKWMSSTARLTRKMMRLPSTSSDLATKKALNNITRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAVNGFAPSVNSSSTKIRVHHKEKKSRTNHFARFRLKCKLATTSTAEGTSQQENVKIDLNDFGLSLRDSSALKQQVFPIMDEVAQAAMLLMDLSCGFVYC* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0440 292 Pfam GATA zinc finger 155 188 IPR000679 GO:0006355|GO:0043565
Gso4g0440 292 ProSiteProfiles GATA-type zinc finger domain profile. 149 185 IPR000679 GO:0006355|GO:0043565
Gso4g0440 292 ProSitePatterns GATA-type zinc finger domain. 155 180 IPR000679 GO:0006355|GO:0043565
Gso4g0440 292 CDD ZnF_GATA 154 191 IPR000679 GO:0006355|GO:0043565
Gso4g0440 292 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 6 291 - -
Gso4g0440 292 SMART GATA_3 149 200 IPR000679 GO:0006355|GO:0043565
Gso4g0440 292 Gene3D - 150 222 IPR013088 GO:0006355|GO:0008270
Gso4g0440 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 190 - -
Gso4g0440 292 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 6 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0440 Gso-Chr4 4157237 4158890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0440 120 291 C2C2-Gata Transcription Factor Family AT4G26150 38.462 5.09e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso4g0440 GATA 5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0440 - - gmx:102659929 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0837 14 9179453 9182559 Gso4g0440 4 4157237 4158890 PCT
Gso17g1938 17 38535372 38538596 Gso4g0440 4 4157237 4158890 PCT
Gso4g0440 4 4157237 4158890 Gso14g0837 14 9179453 9182559 PCT
Gso4g0440 4 4157237 4158890 Gso17g1938 17 38535372 38538596 PCT