Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0436 ATGTTGATGGAGAGTGATATGTACACCGCTGCACTGGGCATTTCTGGCCGAGATGCTAGAGTAATAGATGAAATTTCCCAACATTCCACCTCAAATCCTCTCGTTCAGTGCTATTCACTTGACCTTAACAACCAATCCCACATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCTATAAATAATGTCCATGGTGATGCTTGCTTCATTAATCCTTCAATTATTGCGGACTCTAGTCCATTAGTTACATCACAAGGAAAAACTATTGTGGGAGATGCCTCAAGTCCTATGGAGAACACCGAGTTTCAAGAGCATTTAGTTGGAGGAATGTCAATTACTCCCTCTTCCCTTGTTGCCATTCTAGCTGCTAGAATTGGTTTTGAAGAAAATTTGGAGAACTCATCATCAGCCTTGCCTCCCTCCCTCTGCTCAATAGGGGCACTGGGGGCATTCTTCAACAATTTGCAAGGTACTTCAAATTCAAACCCTTTGTCTGCAACTTTTGAGGACTGTGGTTACAATGAAGTTCCTGGTAATTGGAATGCTAACAAGTTTCCTAAAGCTCCAGAGATTCATGGAACTGGGTGTCAGCCTTATTCTTCTTTAGCAAATCTTGATCCAAATGAATGGACATCATCAAATCTAGCAAACATGGCCAATCATGCTAACCATTCCTCTAGCTTTAGTAAGGAACTTTCTCTAAGTCTCGCAACATCGACAACCACAGGACAATGCTCAGAGGTAAGTTGCTCTAATGTGACCCCATGCATGAATGGAACCATGTCAGGCTTGGAGCAAGCCTTCTGCGGCAGTAGTAGGGAACTTTCTATGAACTTGGGTGGTGATAAATATGTACAGTTTTCACCAAAAGTACTGGAATCGAGATATCTCATTGGGATTCGAGAGATACTTGCTCAAATTGCAAGATATTCATTTGAAAATCTAGAACAGTTAAATTATTCAGCTTCTGGTAATAGATCAGGTGGAAACAAGTCAAGTTCAGCTTTCCCACCCAAGAGAAGAATATTGATAGATAACAATGCAAATTCTACGTATGAAGCTCATGCAGAGCCTCCACTGCAAAGGCATGCTGCTGAATCAAAGAAAGCCCAACTCCTGGCACTTCTACAACTGGCGGACAATCGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTATCCGCTTTCCATGCTGCTACAGAGCTGGACCCGCAAATACATGCACATTTTGCTCTTCAAACCATCTCTATCCTTTACAAGGACCTACGAGAGAGGATCAGCAATTATATTCTTGCCATGGGATCAAATTTCAACAACTCGTGCTCAGAAGAGAATGAATGGTCTGCTGAAACTTCATTCCTTCAGAAGCAATGGGCTCTCCAGCAGTTGAATAGAAAAGATCAGTTGTGGAGGCCACAAAGAGGCTTGCCAGAAAGATCAGTCTGGGTTCTACGGGCTTGGATGTTTCAGAATTTCCTGCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGTCTGTGGAAACCTATGATCGAAGAGATGTATGCTGAAATGAATAAAAGAAAGGCTTGTCGAAATGAAGAAGGAATGCAGAGCAACCACGGAAACAGGATAAGCATGAGCAATCAAAGGTTTAATCAGTGTCAACTATAG 1728 0.4201 MLMESDMYTAALGISGRDARVIDEISQHSTSNPLVQCYSLDLNNQSHIINGISMLSGEQGEPINNVHGDACFINPSIIADSSPLVTSQGKTIVGDASSPMENTEFQEHLVGGMSITPSSLVAILAARIGFEENLENSSSALPPSLCSIGALGAFFNNLQGTSNSNPLSATFEDCGYNEVPGNWNANKFPKAPEIHGTGCQPYSSLANLDPNEWTSSNLANMANHANHSSSFSKELSLSLATSTTTGQCSEVSCSNVTPCMNGTMSGLEQAFCGSSRELSMNLGGDKYVQFSPKVLESRYLIGIREILAQIARYSFENLEQLNYSASGNRSGGNKSSSAFPPKRRILIDNNANSTYEAHAEPPLQRHAAESKKAQLLALLQLADNRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISILYKDLRERISNYILAMGSNFNNSCSEENEWSAETSFLQKQWALQQLNRKDQLWRPQRGLPERSVWVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGMQSNHGNRISMSNQRFNQCQL* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0436 575 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 12 570 - -
Gso4g0436 575 CDD homeodomain 474 535 IPR001356 GO:0003677
Gso4g0436 575 ProSiteProfiles 'Homeobox' domain profile. 493 534 IPR001356 GO:0003677
Gso4g0436 575 SMART HOX_1 474 538 IPR001356 GO:0003677
Gso4g0436 575 SUPERFAMILY Homeodomain-like 476 543 IPR009057 -
Gso4g0436 575 Pfam Associated with HOX 294 431 IPR006563 -
Gso4g0436 575 Gene3D - 477 556 - -
Gso4g0436 575 PANTHER HOMEOBOX PROTEIN ATH1 12 570 - -
Gso4g0436 575 Pfam Homeobox KN domain 491 530 IPR008422 GO:0003677|GO:0006355
Gso4g0436 575 SMART prehox3 288 432 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0436 Gso-Chr4 4124317 4128346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0436 234 547 Homeobox Transcription Factor Family AT4G32980 55.346 3.04e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso4g0436 POX 2.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0436 - - gmx:100820354 1121.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0436 4 4124317 4128346 Gso6g0418 6 3879814 3883151 GST
Gso17g1950 17 38666036 38670504 Gso4g0436 4 4124317 4128346 PCT
Gso4g0436 4 4124317 4128346 Gso17g1950 17 38666036 38670504 PCT