Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0432 ATGATCCCAAACGTTCAAATCCCTACCTGGGACGCGGACGGAGGAGGAGCACTCTCCCCGTCGATCTCTTCCAATGCTGACACGTGCTCATTATTCTCCTCCGACCATTTCCGAATGTTCCAGTTCAAGGTGCGGAACTGTCCACGTGTCAGGTCCCACGACTGGACCGAGTGTCCCTACGCCCACCCCGCCGAGAAGGCTCGCCGCCGTGACCCCCGCAAGTACCACTACTCAGGCACCTCCTGCCCCGATTACCGGAAGGGGAACTGCAAGAGGGGCGACACGTGTCAGTTCGCGCACGGCGTCTTCGAATGCTGGCTCCACCCTTCTCGCTACCGGACCCAGCTCTGCAAAGACGGAACAAATTGCCGCCGCAGAGTGTGCTTCTTCGCCCACACCAGCGACCAACTCCGCGTCGTGACGGATTCATCGTCGTCGTCGTTTGTTTCCTCTCCCACTTCGGTGCTCATTAACTCTTCGTTCTCCGATTCTTCGCCGTACAGCTTCGTCCGCGGAATAGTTAAACTGGATGAGGAAGGGTCGTATTCGGGTCTGACCCGTTGCGTGTTCGGGTCGCCACGTGGCGGGTTTATGAGTGTGAATGGGTGCGAGGAGGAGCCTGCGATGGAGAGGGTGGAATCGGGGAGAGACATTAGAGCGAGGATATATGCGAAGCTTAGTAGGGAGAATTCCATTGGATGA 702 0.5769 MIPNVQIPTWDADGGGALSPSISSNADTCSLFSSDHFRMFQFKVRNCPRVRSHDWTECPYAHPAEKARRRDPRKYHYSGTSCPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTQLCKDGTNCRRRVCFFAHTSDQLRVVTDSSSSSFVSSPTSVLINSSFSDSSPYSFVRGIVKLDEEGSYSGLTRCVFGSPRGGFMSVNGCEEEPAMERVESGRDIRARIYAKLSRENSIG* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0432 233 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 101 IPR000571 GO:0046872
Gso4g0432 233 PANTHER UNKEMPT FAMILY MEMBER 201 232 IPR045234 -
Gso4g0432 233 PANTHER UNKEMPT FAMILY MEMBER 24 170 IPR045234 -
Gso4g0432 233 ProSiteProfiles Zinc finger C3H1-type profile. 77 103 IPR000571 GO:0046872
Gso4g0432 233 SMART c3hfinal6 76 102 IPR000571 GO:0046872
Gso4g0432 233 SMART c3hfinal6 111 134 IPR000571 GO:0046872
Gso4g0432 233 Gene3D - 76 140 - -
Gso4g0432 233 SUPERFAMILY CCCH zinc finger 75 105 IPR036855 GO:0046872
Gso4g0432 233 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 24 170 - -
Gso4g0432 233 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 201 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0432 Gso-Chr4 4086834 4087864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0432 31 163 C2H2 Transcription Factor Family AT5G12850 59.398 5.58e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso4g0432 zf-CCCH 2.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0432 - - gmx:100811289 482.256