Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0426 ATGGAGGAATACACCAATAATCACCTGAGCCAAAACACAAGTCCAAGGGCAAATTTGTTGTATTCTTTGGCTGGTGGTTCAAGCGTAGGAAACCGCCACCACCAACTAATTCCATTTAACACCTTTCATCGTCAAACGGGTAGATCGGATCACTGTTTTCAACCGGATCAAGCACCACACCCTAGTGTGAAAACCGAGTCCAACAATTCCCATCTTCACTATCCTCTAATGAGATCAAATCTTCACCACATGCTGCATCCTCAGCAAGGAGGGAGCCAGAGCTCTAACGAACTTGAAGCCATAAAAGCCAAAATCATTGACCATCCTCACTACTCAAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTAGGAGCTCCGCCAGAAGTGGTGGCGCGTTTTGCTGCGGTTAGAGAGAATTTTGAGGCACGGCAGCGATCTTTGGTTAGGTCAATGGAAACTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCTTACTATGACATGCTAGTGAAGTATCGAGAGGAATTAACGAGGCCTATAGAAGAGGCTAAGGATTTCATGCAGAGGATAGAATCTCAGCTGAACACGCTTTGCAATGGAACCGTGCGGATCTTCTCTGATGATAAGTGGGAAAACATTGGTTCATCATCGGAAGAGGATAAAGACAACAGTGGTCGAGAAACAGAATTGATCGAGATTGATCCCCAAGCGGAAGACCGTGAACTCAAAAGCCACTTGCTCAAGAAGTACAGTGGCTACTTAGGTAGCCTTAAGAAAGAACTTTCTAAGAAAAAGAAAAAAGGAAAACTGCCTAAAGATGCTAGGCAAAAGCTACTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCGCTGGCTGAAGCAACTGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAACGGCACTGGAAACCATCGGAAGACATGCAATTTATGGTTATGGATGGCTTGCATGCGCAGAATGCAACTCTCTATATGGATGGCCACTACATGGCTAATGACCATTACCGTTTATGGCCATAA 1086 0.4392 MEEYTNNHLSQNTSPRANLLYSLAGGSSVGNRHHQLIPFNTFHRQTGRSDHCFQPDQAPHPSVKTESNNSHLHYPLMRSNLHHMLHPQQGGSQSSNELEAIKAKIIDHPHYSNLLQVYMDCQKVGAPPEVVARFAAVRENFEARQRSLVRSMETCKDPELDQFMEAYYDMLVKYREELTRPIEEAKDFMQRIESQLNTLCNGTVRIFSDDKWENIGSSSEEDKDNSGRETELIEIDPQAEDRELKSHLLKKYSGYLGSLKKELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAEATGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAQNATLYMDGHYMANDHYRLWP* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0426 361 SMART KNOX1_2 99 143 IPR005540 GO:0003677|GO:0005634
Gso4g0426 361 SMART KNOX2_2 150 201 IPR005541 GO:0003677|GO:0005634
Gso4g0426 361 CDD homeodomain 275 327 IPR001356 GO:0003677
Gso4g0426 361 ProSiteProfiles ELK domain profile. 243 263 IPR005539 GO:0003677
Gso4g0426 361 ProSiteProfiles 'Homeobox' domain profile. 263 326 IPR001356 GO:0003677
Gso4g0426 361 Pfam Homeobox KN domain 283 322 IPR008422 GO:0003677|GO:0006355
Gso4g0426 361 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 24 353 - -
Gso4g0426 361 SMART HOX_1 265 330 IPR001356 GO:0003677
Gso4g0426 361 Gene3D - 268 330 - -
Gso4g0426 361 Pfam KNOX1 domain 100 141 IPR005540 GO:0003677|GO:0005634
Gso4g0426 361 Pfam ELK domain 243 264 IPR005539 GO:0003677
Gso4g0426 361 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 353 - -
Gso4g0426 361 Pfam KNOX2 domain 154 200 IPR005541 GO:0003677|GO:0005634
Gso4g0426 361 SMART ELK_2 243 264 IPR005539 GO:0003677
Gso4g0426 361 SUPERFAMILY Homeodomain-like 264 337 IPR009057 -
Gso4g0426 361 ProSitePatterns 'Homeobox' domain signature. 301 324 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0426 Gso-Chr4 4009662 4015211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0426 48 361 Homeobox Transcription Factor Family AT4G08150 67.398 8.09e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso4g0426 KNOX2 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0426 - - gmx:100798133 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0426 4 4009662 4015211 Gso4g0426 4 4009662 4015211 ECH