Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0425 ATGGGCTTTGATATCTCTAAACCAGGGCTTCGACTTGGTCTTGGTCTCCATGATGATCACTCATCAGAAAATTGCATGATGAAGACCAATGAACAAAGGCAAAGGCAAAGACAAAGACAAAGCCAGAAGAAAAAGGAAGCAGATCCATGTAACAAGGCTTACCCATCACTTAAGTTAGGACCACCCGATGATGAGGCAAACAATAATAATCAACAAATTACAAATATTGAATCCGATGAATATTATTATTTCCACCCACATGCCTCTTCTAGATCTCCAAGTGCAGTGTCTTCATTTTCCAACTCATCTATCATCATCAAGAGAGAGAGAGAACAACTTGAGTTAGAGGTAGAGAAGATTTCGCTATCAAGAGATTTTGTCGAGGTTGACGAAAATGGTAACCCCAAGAAGAAACTTAGGCTCACCAAAGAACAATCTGCAGTCTTAGAAGATAGCTTCAAAGAGCATTATACTATCAGTCCGAAACAGAAGCAAGAATTGGCAAAGAAACTGAATCTTCGGACTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCGAGGACAAAACTGAAACAAACCGAAGTGGAGCGTGAGTTACTGAAAAAGTGCTGTGAAACTCTAACTGAGGAGAACAAGATGCTGGAAAAAGAGTTGCAAGAGCTCAAATCGACGAAAACATCGATGGGACCCTTTTATATGCAGCTTCCAGTGGAAAGCCTTAGAATATGCCCTTCGTGTGAGAGAATAAGCGGTGGCAACAATGGCTCCTCTCCCACAACGGCTTTGCTTGAAGCCCCAAAGGCCCATAAAGATCAGCCCTTCTATAAAAATAACTACACATTCACCCAATCATCCGCAGCTTTTGCTAGCTAG 876 0.4189 MGFDISKPGLRLGLGLHDDHSSENCMMKTNEQRQRQRQRQSQKKKEADPCNKAYPSLKLGPPDDEANNNNQQITNIESDEYYYFHPHASSRSPSAVSSFSNSSIIIKREREQLELEVEKISLSRDFVEVDENGNPKKKLRLTKEQSAVLEDSFKEHYTISPKQKQELAKKLNLRTRQVEVWFQNRRARTKLKQTEVERELLKKCCETLTEENKMLEKELQELKSTKTSMGPFYMQLPVESLRICPSCERISGGNNGSSPTTALLEAPKAHKDQPFYKNNYTFTQSSAAFAS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0425 291 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Gso4g0425 291 SMART halz 192 236 IPR003106 GO:0006355|GO:0043565
Gso4g0425 291 CDD homeodomain 135 193 IPR001356 GO:0003677
Gso4g0425 291 PANTHER - 7 291 - -
Gso4g0425 291 MobiDBLite consensus disorder prediction 1 74 - -
Gso4g0425 291 Gene3D - 128 198 - -
Gso4g0425 291 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 7 291 - -
Gso4g0425 291 SMART HOX_1 134 196 IPR001356 GO:0003677
Gso4g0425 291 SUPERFAMILY Homeodomain-like 130 193 IPR009057 -
Gso4g0425 291 Coils Coil 191 225 - -
Gso4g0425 291 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Gso4g0425 291 MobiDBLite consensus disorder prediction 13 51 - -
Gso4g0425 291 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0425 Gso-Chr4 3998745 4000723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0425 130 250 Homeobox Transcription Factor Family AT4G37790 69.672 2.40e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso4g0425 Homeodomain 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0425 K09338 - gmx:100790927 516.924