Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0417 ATGGGTGGCCGTGAAAATGCATTGGGGCTTCAAAGTGTCTCAGAAACGACAGTAATTAGTTCTGTGTCTATGGCTATGCCTTCAGGAGTCGTGGCTAACCCTTTTCTTGCTTCTTCTGCTTGGGATCCACTTGTTCCATTGAGTCAAACTTTGGGAGGCTCTCTTATGGTTTCTCATAGTGAGTTTGCCAATTCAGCTTACCCTTCTGTTTTGGAAAACCAGGGAATGAACTGTGACTCTCACTTTGTTCAATATGTATCTGACTCAAATTTTGAGCACATGGCCCTTAAGGTTCCCTCCTTTGGCCAAACCGGTTCTTATGATATAGCTAACACAGGGTATCTGCCAAATCATAATCCGAGTAATGAGTCTGGAATGGAAAGGAGTCCAATAAACAATGAGCAATCTAAGCTCGAAGGTTCAACTTCTGAAGAAGGAGCTGCACCTGATGAACACAAAAGAAAGCGTGGACTTGACTATAATTTTACTTTCAGTTCAAATAAGAATGCTGAGGGGGAAGCACTTAAAGATTCTTCTGGGAAGAGCTGTGATGATGATGTGAAAGAACAATGTGAAAAGAAGCCTAGAGTTGCACAAAATAGTACTGCTAACTTATGTGGAAAGCAATTGCTGAAGCAAAAGAAAGATGACTCCGAGAGTGAAGAAGGTTCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCACAGCCTTGCAGAAAGGGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCGATAAGAAAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTATGTGCAATCACTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTAAATCCACAATTGAATTTTAATGTAGAGCAGATCTGTTCCAAAGATGTAAGTTCACACATTGGACATGGACCTATTGGTGGATATGGTGCCAGCATCAGCATGCCTAACCCATCAACACAATTCCCTCCAATGCCACAGTCTGTTTTGAACCAAAGCTTTTATGAAACAAGTTACAATACCATTACAGCTCTTGACAATTTGGGAACCAGTGGATGGTTGAAAACAGAGTTATAG 1137 0.4151 MGGRENALGLQSVSETTVISSVSMAMPSGVVANPFLASSAWDPLVPLSQTLGGSLMVSHSEFANSAYPSVLENQGMNCDSHFVQYVSDSNFEHMALKVPSFGQTGSYDIANTGYLPNHNPSNESGMERSPINNEQSKLEGSTSEEGAAPDEHKRKRGLDYNFTFSSNKNAEGEALKDSSGKSCDDDVKEQCEKKPRVAQNSTANLCGKQLLKQKKDDSESEEGSKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCDKKTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPQLNFNVEQICSKDVSSHIGHGPIGGYGASISMPNPSTQFPPMPQSVLNQSFYETSYNTITALDNLGTSGWLKTEL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0417 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 287 IPR011598 GO:0046983
Gso4g0417 378 Gene3D - 234 311 IPR036638 GO:0046983
Gso4g0417 378 CDD bHLH_AtBPE_like 227 312 - -
Gso4g0417 378 MobiDBLite consensus disorder prediction 211 232 - -
Gso4g0417 378 MobiDBLite consensus disorder prediction 211 249 - -
Gso4g0417 378 MobiDBLite consensus disorder prediction 112 159 - -
Gso4g0417 378 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 18 378 - -
Gso4g0417 378 MobiDBLite consensus disorder prediction 144 159 - -
Gso4g0417 378 SMART finulus 243 293 IPR011598 GO:0046983
Gso4g0417 378 MobiDBLite consensus disorder prediction 112 142 - -
Gso4g0417 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 306 IPR036638 GO:0046983
Gso4g0417 378 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 18 378 IPR024097 GO:0006355
Gso4g0417 378 Pfam Helix-loop-helix DNA-binding domain 240 288 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0417 Gso-Chr4 3861634 3865396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0417 1 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 39.801 2.89e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g0417 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0417 - - gmx:100787749 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0417 4 3861634 3865396 Gso4g0417 4 3861634 3865396 ECH