Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0415 ATGAATTTCAAGATGGATTCCGATAGCGCGAAGCTGTTCGTAGGAGGCATTTCTCGCGACACTACCGAACACGTTCTCAAACTCCACTTCGCCAAGTACGGCGTCGTTTCGGACTCCACAATCTCCGTAGACCGCACCACCCGAAGCCCTAGAGGTTTTGGCTTCGTCACCTTCTCCGACCTCTCCGCAGCTGATAAAGCCCTCCAAGACACCCACGTCATCCTCGGAAGAACGGTAGAAGTGAAAAAAGCAATTCCCAGGAGTGAACAACATCAACACCAAAACCCATTACAGAGTAGAGGGGGTGGTTATTATTATAATAATAATAATAATAATAATAATAATAATGATAATAATAATAATAGTAATGACTATTGCAGTGACCACAACGTTAGGACTAAAAAGATATTTGTAGGGGGTTTACCTGCTGGTATATCCGAGGAGGAGTTTAAGAACTACTTTGAGAGGTTCGGTCGGATAACCGATGTCGTGGTGATGCAGGACAGTGTAACTCACCGGCCAAGGGGGTTTGGGTTCATCACTTTCGAGTCCGAGGAATCGGTTCAAAACGTTATGGTGAAGAGTTTTCATGACTTGAACGGTAGACAGGTGGAGGTGAAGAGGGCTGTTCCCAAAGAGGGGAACCATGGCTATGATGGGTTTAGTAAATTAAGAAATAAGAGTGAAAGAGGAGTTCCTAAGAGTTTTCCTCCTTTTAGTCATAGGGATATGCTCCCGCTCCCAGGTTTCACACCTTTGCCGTGGTATAGTGGTGATGGAGTATATGCATATGGGTCTAATGCGTATGGTTGCTGGTACCCTGTGGGTGGTTATGGGGGGAATGGATACGCAGTTCCTTCTGATGCTCCTAGTAACCTCTGGTATGGGCCAATGATGACTGGTCCTCAGGCATGTCAGGTGCCTTACGCTAGTGCTGTTCCAAATGTTGTGTATGTGGGGGGTAGGATTGGAATAGTAGGTAGTGGTGCTGGATCTTGGGGGTACACTGGCATTATGGGATCTGCAACAAATTTGAAATTTGATCAAGCTTTTAATGCCAATGAATTTGTTCCTGGCAATGTGACATCACCTCATGGTGTAAAGCAGGATGTTATTGACTCTTCAAGTTTGAAAGGAAGCAATGGTGGAATTTCTAGTTGA 1161 0.4522 MNFKMDSDSAKLFVGGISRDTTEHVLKLHFAKYGVVSDSTISVDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQHQHQNPLQSRGGGYYYNNNNNNNNNNDNNNNSNDYCSDHNVRTKKIFVGGLPAGISEEEFKNYFERFGRITDVVVMQDSVTHRPRGFGFITFESEESVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRNKSERGVPKSFPPFSHRDMLPLPGFTPLPWYSGDGVYAYGSNAYGCWYPVGGYGGNGYAVPSDAPSNLWYGPMMTGPQACQVPYASAVPNVVYVGGRIGIVGSGAGSWGYTGIMGSATNLKFDQAFNANEFVPGNVTSPHGVKQDVIDSSSLKGSNGGISS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0415 386 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 383 - -
Gso4g0415 386 Gene3D - 130 218 IPR012677 -
Gso4g0415 386 MobiDBLite consensus disorder prediction 367 386 - -
Gso4g0415 386 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 383 - -
Gso4g0415 386 MobiDBLite consensus disorder prediction 90 127 - -
Gso4g0415 386 MobiDBLite consensus disorder prediction 85 127 - -
Gso4g0415 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 202 IPR000504 GO:0003723
Gso4g0415 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Gso4g0415 386 SUPERFAMILY RNA-binding domain, RBD 130 219 IPR035979 GO:0003676
Gso4g0415 386 SUPERFAMILY RNA-binding domain, RBD 6 116 IPR035979 GO:0003676
Gso4g0415 386 SMART rrm1_1 11 82 IPR000504 GO:0003723
Gso4g0415 386 SMART rrm1_1 135 207 IPR000504 GO:0003723
Gso4g0415 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 211 IPR000504 GO:0003723
Gso4g0415 386 Gene3D - 2 123 IPR012677 -
Gso4g0415 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0415 Gso-Chr4 3828557 3830234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0415 12 299 Eukaryotic Initiation Factors Gene Family AT2G23350 25.000 1.74e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0415 K14411 - gmx:100786665 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0415 4 3828557 3830234 Gso4g0415 4 3828557 3830234 ECH
Gso4g0415 4 3828557 3830234 Gso6g0396 6 3664775 3666701 GST