Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0409 ATGCTTCTTTACCAACCACCCAAAGAAGAGGTAGAAAGAACCATGAAGGGCAACAACGTTTTGGATCTGAAAACGTTAATTGATGAGCTTGAGTCATCATCAATTGAAGTCCCTTCGGTTTTTATCTGCCCTATTTCACTTGAGCCAATGCTAGACCCGGTGACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAGATGGTTCTCCCTCGGTCACAACACGTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCGGTCACACCAAACACCACACTCCACCACTTCATACTCTCTTGGTTCTCTCACAAGTACTTGGTCATGAAGAAGAAGCTCGAGGACGTTCAAGGCACGGCCTTGGAGCTCTTGGACACGTTAAAGAAGGTAAAGGGTCAAAATAGAGTTCGAGCTCTCAAACAACTTCGCCAACTCGTTGATTCCCACGTGTCCACGAGGAAAACCGTTGAGGAAAATAATGGTTCTTCTTTGATTTCTTCCTTGCTGGGTCCTTTCACTTCCCACGCTGTTGGTTCGGAAGCAATTGGGATTCTCGTGAATTTGGAGTTGGGTTCGGAGTTGAAGAGGAGTCTCATGGACCCCGCGAAGGTGTCGTTGTTGGTGGACATCATGAACGAGGGAACAATTCAGACAAAGATGAATTGTGCCAAATTGATTCAAACGTTGTTGGTAGAAGGTGACCCCTCCGAGACAGTTGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTGTTGAGGTTAGTGAGAGATAAGAAACACCCCACTAGTGTTGTAACCGGACTCATATTACTCAAAATTGTATCTTCGCGTGAATCCGTTAGAGGCTCAATTATAAGCATAGGAGCGGTGCCTCAATTGATTCAGCTTTTACCCACTTTGAATAATGAGTGTTTGGAGATAGCACTTCATATTCTTGAGGTTTTGTCAACACTTCCTGAAGGGAGAATGGCTTTGAAAGAGTGTCCAAATATTATTCCCAATGTGGTCAAGTTGTTGATGAGAGTTTCAGAGAGTTGCACACAATTTGCATTGTCGATATTGTGGGCTATTTACAAGCTTGCCCCAGAGGAATGTGCTTCGAAAGCTGTGGAGGCAGGGTTGGCGGCGAAGCTACTGCTAGTAATTCAGAGTGGTTGCAACCCGGTGTTAAAGCAGAAATCTACCGAGTTTTTGAAAATGTGCAGCCTAGATTACTCTACTAGTATTTTGATTTCCAAGTGTATGCTTACTGCAACAATACAATGA 1269 0.4452 MLLYQPPKEEVERTMKGNNVLDLKTLIDELESSSIEVPSVFICPISLEPMLDPVTLCTGQTYDRSNILRWFSLGHNTCPTTMQELWDDSVTPNTTLHHFILSWFSHKYLVMKKKLEDVQGTALELLDTLKKVKGQNRVRALKQLRQLVDSHVSTRKTVEENNGSSLISSLLGPFTSHAVGSEAIGILVNLELGSELKRSLMDPAKVSLLVDIMNEGTIQTKMNCAKLIQTLLVEGDPSETVVLSSLSLLVGVLRLVRDKKHPTSVVTGLILLKIVSSRESVRGSIISIGAVPQLIQLLPTLNNECLEIALHILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSTEFLKMCSLDYSTSILISKCMLTATIQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0409 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 118 IPR013083 -
Gso4g0409 422 PANTHER WDSAM1 PROTEIN 14 421 IPR045185 GO:0061630
Gso4g0409 422 Pfam U-box domain 37 107 IPR003613 GO:0004842|GO:0016567
Gso4g0409 422 Gene3D - 119 270 IPR011989 -
Gso4g0409 422 SMART Ubox_2 40 103 IPR003613 GO:0004842|GO:0016567
Gso4g0409 422 CDD RING-Ubox_PUB 41 83 IPR045210 -
Gso4g0409 422 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 421 - -
Gso4g0409 422 Gene3D - 271 413 IPR011989 -
Gso4g0409 422 ProSiteProfiles U-box domain profile. 36 110 IPR003613 GO:0004842|GO:0016567
Gso4g0409 422 SUPERFAMILY RING/U-box 25 105 - -
Gso4g0409 422 SUPERFAMILY ARM repeat 116 399 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0409 Gso-Chr4 3755914 3757556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0409 21 422 U-box Gene Family AT3G49810 62.687 1.93e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0409 - - gmx:100785092 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0409 4 3755914 3757556 Gso6g0388 6 3597188 3598970 GST