Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0396 ATGGATGATCTTTCATCCAGCCTTCTGTGCCAAGAAAACGAAACGTGTTTGGAAGAAGGAGGTGAAGAATTAGAATACCAATTCGTTGGATCACAGCATGATTGTGGGGTTTCAGAGGATGAACATGTGGGAATTTTGATTGAGAGAGAGATCGTTCTTGGGTTCAAAAAGGATGAAACTATGGTGATTGGGGACTGGGTGAAACGTGCACGCATGGAAGCAATCAATTGGGTTCTCAAAACAAGAGCAACACTGGGTTTTCGCTTCGAAACGGCTTATTTGTCAGTCACATACTTCGATCGATTTCTTTTCAGACGGTCCATTGATAGTGAAAAGAGTTGGGCAATTCGGTTGCTATCAATTGCATGTCTCTCTCTGGCTGCAAAGATGGAGGAGTGCATTGTGCCGGGGCTATCAGAGTTCAAATTGGATGATTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTTTTGGTGCTCAGCACATTGGAGTGGAAAATGGGAATCATCACTCCATTTGATTTCCTTTCCTATTTCATCAGAAAAATCTGCAAAGAATCCCCACCAAGTCCTATTTTTTCCAAGACCATGCAACTCATCTTCACCACAATGAAAGAGGTCAATTTAATGGATCACAAGCCATCAGTTATTGCTGCGGCAGCTACTTTGGTGGCAATGGATCAGCAATTAACGATAGATGCGGTGGAGTTGAAGATGAGTTCAATTCCACAACATAGGCTTCTAGAATCTAAAGATGTATTTGAGTACTACAATCTAATTCAAAGATTATACGAGGAGAATACCAAAAGCGACACGCATACGCCAATTGAGATGACAGAGAGCTCCCGAGTTACTTCTTCTGCAGCAATGGCAAAGAGAAGAAGACTCGCATTCAGTGATGATGAAGGAAGTAGTCATGGGAAGGGACCGGGCTAG 939 0.426 MDDLSSSLLCQENETCLEEGGEELEYQFVGSQHDCGVSEDEHVGILIEREIVLGFKKDETMVIGDWVKRARMEAINWVLKTRATLGFRFETAYLSVTYFDRFLFRRSIDSEKSWAIRLLSIACLSLAAKMEECIVPGLSEFKLDDYSFEGKVIQKMELLVLSTLEWKMGIITPFDFLSYFIRKICKESPPSPIFSKTMQLIFTTMKEVNLMDHKPSVIAAAATLVAMDQQLTIDAVELKMSSIPQHRLLESKDVFEYYNLIQRLYEENTKSDTHTPIEMTESSRVTSSAAMAKRRRLAFSDDEGSSHGKGPG* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0396 312 MobiDBLite consensus disorder prediction 272 312 - -
Gso4g0396 312 SMART Cyclin_C_2 171 290 IPR004367 -
Gso4g0396 312 MobiDBLite consensus disorder prediction 275 289 - -
Gso4g0396 312 Gene3D - 170 232 - -
Gso4g0396 312 Pfam Cyclin, C-terminal domain 171 283 IPR004367 -
Gso4g0396 312 Gene3D - 68 169 - -
Gso4g0396 312 Pfam Cyclin, N-terminal domain 68 168 IPR006671 -
Gso4g0396 312 PANTHER CYCLINS 39 279 IPR039361 -
Gso4g0396 312 PANTHER CYCLIN-D5-1 39 279 - -
Gso4g0396 312 CDD CYCLIN 71 161 IPR013763 -
Gso4g0396 312 SUPERFAMILY Cyclin-like 154 243 IPR036915 -
Gso4g0396 312 SMART cyclin_7 76 162 IPR013763 -
Gso4g0396 312 SUPERFAMILY Cyclin-like 34 168 IPR036915 -
Gso4g0396 312 ProSitePatterns Cyclins signature. 71 102 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0396 Gso-Chr4 3607716 3610310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0396 8 221 Core Cell Cycle Gene Families AT4G37630 39.640 5.83e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0396 K18811 - gmx:100780266 601.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0396 4 3607716 3610310 Gso4g0396 4 3607716 3610310 ECH
Gso4g0396 4 3607716 3610310 Gso6g0374 6 3491798 3494252 GST