Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0394 ATGGGACCTGGTGTTGGAGCCTTCCCTGATGGAGAACGGGATTGCTTTGGCAAAATGTTGGCCAATGAAGCCCATTATTGCTCACCACAATTACTTGAGGAAGATGATGGGAATGTTGGAATGCAATCCATGTTTTGCTCCACTCTTGATGTTGGGGGAAATAAGAATATGTTTTACTCTTTTGACTCTCACAACTCTAGTTTGCAGTATATTTCTCAAGAAAGCAGTCACAATAATAGCACTTGTTGTGGCCATAGTGTCTTCATGGCCAATCCGGAGGATCATACAAACTACCATTTTGGTCATGTTGATCATGTGCTAGCAAATAGTACATCCATGGATTTTTGCATGATAGATGAGAAAAACCCTGGCTCTTTTGTCCAATCTGACATTGTCATGAAAGAGAATGCCAGTTTGAATGAAGATGAGGGAAGTGACAAATCAGAGAATGTTTTTCCTGCCAAACATTTGAAGTTCAAAAGGATGTCTGATCATATGCCCGAACTCAAAGTGCATGTAGAAGATAAAATAAACTCACATGGGAATGGTAACAAAAAACCTCGTGTTTCAAAAGATGAGCAGCATTGCATGAAGAACCAGAAACTTGACAAAATTGGGAACCAGGCAGAAGAGATTAATGCAGGTTCAGATGGACACAGTTCTAGTAGTTACACTCGAGAGGATGATAATGCTTCTGCTCTCAACTTCAAAGGGAAAACAAAAGCTAGTAAGGGAGCAACAGATCCTCAGAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATAGATGACAGGCTAAGAATTCTGCAAAATCTTGTCCCCAACGGAACAAAGGTTGATATAAGCACTATGCTTGAAGAGGCAGTCCAATACGTGAAATTTTTGCAGCTCCAGAACAAGCTTTTAAGCTCTGATGATTTGTGGATGTACGCTCCGATAGCTTATAATGGACTTGACCTCGTACTCAATCTCAATCCTAAGAGTTCTCCACCTTTGTGA 996 0.4056 MGPGVGAFPDGERDCFGKMLANEAHYCSPQLLEEDDGNVGMQSMFCSTLDVGGNKNMFYSFDSHNSSLQYISQESSHNNSTCCGHSVFMANPEDHTNYHFGHVDHVLANSTSMDFCMIDEKNPGSFVQSDIVMKENASLNEDEGSDKSENVFPAKHLKFKRMSDHMPELKVHVEDKINSHGNGNKKPRVSKDEQHCMKNQKLDKIGNQAEEINAGSDGHSSSSYTREDDNASALNFKGKTKASKGATDPQSLYARKRRERIDDRLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQNKLLSSDDLWMYAPIAYNGLDLVLNLNPKSSPPL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0394 331 MobiDBLite consensus disorder prediction 174 196 - -
Gso4g0394 331 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 329 - -
Gso4g0394 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Gso4g0394 331 SMART finulus 251 300 IPR011598 GO:0046983
Gso4g0394 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 310 IPR036638 GO:0046983
Gso4g0394 331 Gene3D - 248 308 IPR036638 GO:0046983
Gso4g0394 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 329 - -
Gso4g0394 331 Pfam Helix-loop-helix DNA-binding domain 255 295 IPR011598 GO:0046983
Gso4g0394 331 CDD bHLH_AtIND_like 246 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0394 Gso-Chr4 3589541 3591291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0394 210 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 76.316 9.53e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g0394 HLH 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0394 - - gmx:100779202 669.463