Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0389 ATGGTCTTCCTCTATGATAAAGATTCCCCGAGGCAGCAAAAAAGAAAAAGCATGAGCTGCAATGGTTGCCGAGTCCTCCGCAAAAGATGCAGCGAGAGGTGCAGCCTGAGATCCTCCCTGAACTGGATCGATTGTCCGCATGCACAGGCCCATGCAACTCTCTTCCTGGCTAAGTTCTTCGGCCGTAGCGACCTCATGTTTTTCATCTCCTCCGTCCCACTAAACAACAGACCCGCGCTCTTTCAGTCTCTTCTGTTTGAAGCGTGCGGACGGACCGTTAATCCCGTTAACGGTGCCGTCGGACTCCTGCTGAGCGGTAACTGGCACGTGTGCCAGGCCGCCGTCCACACGGTGCTCGCCGGAGGCGTTCTCCGGCCGCTGTCGGAGGTTGTGGCGCCATCAGAAAGCATGTTCTCTCATCAGTTCCAGTCTCTGGCGTCAGATTCTTTGAAGAGAAGCAGCGATGCAACAGCACCGGTTATGTCGACCATGGTTTCTGGAGAATCAGAGATTTGCAGCAGCGACGATGGGAAAAAGCTTTTGAATCTGTTCGTCTAG 558 0.5412 MVFLYDKDSPRQQKRKSMSCNGCRVLRKRCSERCSLRSSLNWIDCPHAQAHATLFLAKFFGRSDLMFFISSVPLNNRPALFQSLLFEACGRTVNPVNGAVGLLLSGNWHVCQAAVHTVLAGGVLRPLSEVVAPSESMFSHQFQSLASDSLKRSSDATAPVMSTMVSGESEICSSDDGKKLLNLFV* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0389 185 Pfam Lateral organ boundaries (LOB) domain 19 118 IPR004883 -
Gso4g0389 185 ProSiteProfiles LOB domain profile. 18 124 IPR004883 -
Gso4g0389 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 150 - -
Gso4g0389 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 18 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0389 Gso-Chr4 3555408 3556337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0389 18 139 AS2 family AT4G37540 69.672 5.97e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso4g0389 LOB 3.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0389 - - gmx:100800624 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0389 4 3555408 3556337 Gso4g0389 4 3555408 3556337 ECH