Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0386 ATGAAAGAAGCGGATGAGCAACTATGCGAGGCGGCCATTAAAGGTGACACGAAGAAAGTGAGGTCTCTTATATACTCCGGCGCTGACGTCACCCACTTTGACGGCGATGGCCTCAATCCTCTGATGCACGCCGCAAAGCACGGCCATGCACCCGTCCTCACCCTCCTCCTCTCCGTCGGCGCTCCCTGGAACGCTCTTTCTCCCTCCAACCTCTCCGCCGGTGACTACGCCATGCAAGAAGGCCACAACGAAACCTTCGAGCTTCTCCTCAACGCCGGGATCCAATCTGAACTGATACTGGGAACAATTGCGAGGAAGGCAAACAAGAACGGCGATTCCGGTCACGATTATTTGGAAGATAGGGTGAGTTTTAGCGAAGACAAGCTTATGGACTCTGAAAGCAAGGCTGTGATGATGGCATGGGAGAATCCGTTGATGGAGGCTCATGCTAAGGCGGTTTGTTCCGGTGGTGGCCACGTACTCAATATTGGGTTTGGTATGGGGCTCGTGGATTCGGCCATTCAGCGATATGCACCTGCTTCACACACCATTGTTGAGGCTCATCCTGAGGTTTATGAACGCATGCTTCGCTCCGGTTGGGGCCAGAAGGAAAATGTCAAGATTGTTTTTGGACGATGGCAAGATGTTCTGCCTCAGCTTGAAACATATGATGGAATATTCTTCGACACCTATGGGGAGTACTACGAAGATCTGAGGGAGTTCCATCAGCATCTCCCGGCATTGTTGAAGACTGGTGGTATCTACTCATTCTTCAATGGCCTTTGTGGCAGTAATGCATTTTTCCATGTTGTTTACTGCCATTTGGTATCTCTTGAGCTTGAGAATTTGGGGTATTCCACACAATTGATTCCATTGCCGGTTAAGGATTGTTTGGGAGAACAAGTTTGGGAAGGTGTGAAACAAAGATATTGGCAGCTCGATACGTACTATCTTCCTGTCTGTCAGGCCATAGAGAACCCTGAGTGA 987 0.4985 MKEADEQLCEAAIKGDTKKVRSLIYSGADVTHFDGDGLNPLMHAAKHGHAPVLTLLLSVGAPWNALSPSNLSAGDYAMQEGHNETFELLLNAGIQSELILGTIARKANKNGDSGHDYLEDRVSFSEDKLMDSESKAVMMAWENPLMEAHAKAVCSGGGHVLNIGFGMGLVDSAIQRYAPASHTIVEAHPEVYERMLRSGWGQKENVKIVFGRWQDVLPQLETYDGIFFDTYGEYYEDLREFHQHLPALLKTGGIYSFFNGLCGSNAFFHVVYCHLVSLELENLGYSTQLIPLPVKDCLGEQVWEGVKQRYWQLDTYYLPVCQAIENPE* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0386 328 Pfam Ankyrin repeats (3 copies) 9 95 IPR002110 GO:0005515
Gso4g0386 328 Gene3D - 1 106 IPR036770 -
Gso4g0386 328 SMART ANK_2a 69 98 IPR002110 GO:0005515
Gso4g0386 328 SMART ANK_2a 3 32 IPR002110 GO:0005515
Gso4g0386 328 SMART ANK_2a 36 65 IPR002110 GO:0005515
Gso4g0386 328 PIRSF Rmt2 104 325 IPR017408 GO:0016274
Gso4g0386 328 PIRSF Rmt2 1 116 IPR017408 GO:0016274
Gso4g0386 328 ProSiteProfiles Ankyrin repeat profile. 36 68 IPR002110 GO:0005515
Gso4g0386 328 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 321 IPR029063 -
Gso4g0386 328 ProSiteProfiles Ankyrin repeat region circular profile. 36 61 - -
Gso4g0386 328 ProSiteProfiles Arginine and arginine-like N-methyltransferase domain profile. 110 328 IPR026480 -
Gso4g0386 328 CDD AdoMet_MTases 160 255 - -
Gso4g0386 328 SUPERFAMILY Ankyrin repeat 8 96 IPR036770 -
Gso4g0386 328 PANTHER GUANIDINOACETATE N-METHYLTRANSFERASE 2 323 - -
Gso4g0386 328 Gene3D Vaccinia Virus protein VP39 107 323 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0386 Gso-Chr4 3526551 3529011 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0386 K18477 - gmx:100796916 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0386 4 3526551 3529011 Gso4g0386 4 3526551 3529011 ECH
Gso4g0386 4 3526551 3529011 Gso6g0363 6 3407539 3409697 GST