Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0381 ATGGCTCTGTTACACCGAGCCATGCGCACTATACCATCCCAGCATCAGCGGTGGCAACATGCTTGGATGCTGCCTCCTCTCACCATTTGGATTTGTGTTTCAATCACACTTCGTTATGGTTATTACGGCGATTCATGCATCCTGCTTGGCCCTGCCTCGTCCCGTTTGATGAAGACCAGTTCTGTTTTTGTGAAGCAGCTTCAAGTGTCAAACGAGGACAATAATCAAGTTATTCTCCATGCCTTCAACGAGGAGCCCGAGTTAAGCTCCCAAACTAATTGGACAGTGTCAAATTTCTTCCTTGTTGAAGCGTATAAAAGCAAGGTAATTTCTTTGTGGTTAAATCAGGGCTCCACCATCCGTATGAGGTGGGAAGCACACACTACTAGTAGTTTGGATCAGCTACATGGGATGGTGATCAAAGGAGAAAAGAAGTTTGAACTACTACAGCCTAAACAAACGAGCTTCCTCAATGCAATTGCTCTTCGCAAGACTGTTAATGGTAAAGAAGCTGAATACAATGTTGAGGAAGATAATATATACCACATTGGGGTTCTAAACATGAATTCCAGGAACATAATATTGACTATGAAAGTTAATGTTTTGGCAAAGGTATATGATACCACCAAAGGCAAGAAGATGTGCTCTACTGCAAATGGATTCTGTAGACTCAGTTTTGTCTTCCCTAATACTCAGTATGTTATTCTTACGGCAACTGGCAAAGTTGATGGGGGATCGTATGTTGAAATTTCTTTTCTGGCTCGTGTGTTGACCTACATATTACTTTTAGGAGCTCTTATGATTGTTATTTATCTGGTTCTGAAGTTCCTTGAAGTCCATGAAGGTGGTGATCAGAATAGTCATGCGGCAGTCGACGTCACATACAGAACAAGTAATGTAGTTGCAAGGCAAACCGAAACTCAGCCCTTGATGCAAGTGGAGACAAATCCATTGACATATGGAACAAATGCAAAAGATGATGAAGAAGAAGATTCAGGAGCATCCAGTAGCTCTTCAAAGGAGTTATATGATGAAAAATTGTGTTGCATTTGTTATGATGAACAACGCAGTAGCTTCTTTGTTCCTTGTGGACATTGTGCCACTTGCTATGACTGTGCACAGAGGATTTTAGATGAGGAGAGCATAGTGTGTCCTATATGCCGAAGGCTTATTCACAAAGTACGAAGATTATATCATAATTAG 1203 0.4131 MALLHRAMRTIPSQHQRWQHAWMLPPLTIWICVSITLRYGYYGDSCILLGPASSRLMKTSSVFVKQLQVSNEDNNQVILHAFNEEPELSSQTNWTVSNFFLVEAYKSKVISLWLNQGSTIRMRWEAHTTSSLDQLHGMVIKGEKKFELLQPKQTSFLNAIALRKTVNGKEAEYNVEEDNIYHIGVLNMNSRNIILTMKVNVLAKVYDTTKGKKMCSTANGFCRLSFVFPNTQYVILTATGKVDGGSYVEISFLARVLTYILLLGALMIVIYLVLKFLEVHEGGDQNSHAAVDVTYRTSNVVARQTETQPLMQVETNPLTYGTNAKDDEEEDSGASSSSSKELYDEKLCCICYDEQRSSFFVPCGHCATCYDCAQRILDEESIVCPICRRLIHKVRRLYHN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0381 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 399 IPR013083 -
Gso4g0381 400 SUPERFAMILY RING/U-box 340 394 - -
Gso4g0381 400 MobiDBLite consensus disorder prediction 318 338 - -
Gso4g0381 400 Pfam Zinc finger, C3HC4 type (RING finger) 345 394 - -
Gso4g0381 400 Pfam Domain of unknown function (DUF4793) 171 272 IPR032010 -
Gso4g0381 400 ProSiteProfiles Zinc finger RING-type profile. 348 388 IPR001841 -
Gso4g0381 400 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 15 399 - -
Gso4g0381 400 Pfam Domain of unknown function (DUF4792) 78 146 IPR032008 -
Gso4g0381 400 SMART ring_2 348 387 IPR001841 -
Gso4g0381 400 PANTHER OS05G0521000 PROTEIN 15 399 IPR044586 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0381 Gso-Chr4 3486113 3489077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0381 331 398 C3H Transcription Factor Family AT1G62370 33.824 1.04e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0381 - - gmx:100777075 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0381 4 3486113 3489077 Gso4g0381 4 3486113 3489077 ECH
Gso4g0381 4 3486113 3489077 Gso6g0356 6 3347284 3350311 GST