Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0379 ATGGAGACTCGTGCTGCTTCAAAGAGAAAGGCAAACGCCGCCACCATAGTCATAGTCGAAAAACAACACCCCAAGAGACAGCGCGTTGTGTTGGGTGAACTTTCCAATCTACCAAACATTATTGTCCCCGAAACTCAAAATCCACGCAAAGAGAAACTCCAATGTCGGAAGAATCCCAATACGAAGAAACAATCTCTTACAAACAACACCCTTTCTTTCCCCCAGATCGATGAATCTCATGTTTTCGAGATCTTTGAGTATCTTCACGCAATGGAGAGAAAGAGAAGACCAATGATTGATTACGTGGAGAAAGTTCAAAAACAAGTTACGACAACTATGAGGACAATATTGGTGGATTGGTTGGTTGAGGTAGCTGAGGAGTACAAGCTTCTCCCAGATACCCTTCATCTATCTGTTTCATACATCGATAGATTTTTGTCTGTTAATCCTGTTAGTAAATCAAGGCTTCAATTGCTAGGTGTTTCATCCATGCTCATTGCTGCCAAGTATGAGGAAGTTGACCCACCCCGTGTTGATGCGTTCTGCAACATCACTGATAACACATACCACAAGGCAGAGGTTGTAAAGATGGAAGCTGACATACTCAAGACTTTAAAGTTTGAGATGGGGAATCCAACTGTAAACACCTTTCTAAGGAGGTTTGCTGATGTTGCTTCTGAGAACCAAAAAACTCCAAATTTGCAGATTGAATTTTTGATTGGCTACCTTGCTGAGCTAAGTTTGTTGGACTATGATTGTTTGATATTCTTGCCTTCTATTTTGGCCGCATCAGCTATATTTCTTGCCAGATTTATTATCTGGCCTGAAGTGCATCCTTGGACTTCTTCCTTGTCTGAATGCTTGGGTTACACACCGGCTGATTTAAAAGAATGTGTCCTCATCTTGCATGACTTGTATTTGTCAAGAAAGGCAGCATCCTTCAAAGCTGTTCGGGATAAATACAAGCAACACAAGTTCAAATATGTAGCTAATCTGCCTTCCCCTCCACATGTACCAAGTTATTACTTTGAAGAACAGTGA 1041 0.4131 METRAASKRKANAATIVIVEKQHPKRQRVVLGELSNLPNIIVPETQNPRKEKLQCRKNPNTKKQSLTNNTLSFPQIDESHVFEIFEYLHAMERKRRPMIDYVEKVQKQVTTTMRTILVDWLVEVAEEYKLLPDTLHLSVSYIDRFLSVNPVSKSRLQLLGVSSMLIAAKYEEVDPPRVDAFCNITDNTYHKAEVVKMEADILKTLKFEMGNPTVNTFLRRFADVASENQKTPNLQIEFLIGYLAELSLLDYDCLIFLPSILAASAIFLARFIIWPEVHPWTSSLSECLGYTPADLKECVLILHDLYLSRKAASFKAVRDKYKQHKFKYVANLPSPPHVPSYYFEEQ* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0379 346 Pfam Cyclin, N-terminal domain 83 209 IPR006671 -
Gso4g0379 346 ProSitePatterns Cyclins signature. 114 145 IPR006671 -
Gso4g0379 346 Gene3D - 97 210 - -
Gso4g0379 346 SMART Cyclin_C_2 212 335 IPR004367 -
Gso4g0379 346 SUPERFAMILY Cyclin-like 80 209 IPR036915 -
Gso4g0379 346 Pfam Cyclin, C-terminal domain 212 334 IPR004367 -
Gso4g0379 346 PANTHER CYCLINS 21 345 IPR039361 -
Gso4g0379 346 CDD CYCLIN 113 202 IPR013763 -
Gso4g0379 346 MobiDBLite consensus disorder prediction 43 67 - -
Gso4g0379 346 SMART cyclin_7 119 203 IPR013763 -
Gso4g0379 346 SMART cyclin_7 216 304 IPR013763 -
Gso4g0379 346 Gene3D - 83 331 - -
Gso4g0379 346 CDD CYCLIN 212 303 IPR013763 -
Gso4g0379 346 SUPERFAMILY Cyclin-like 212 337 IPR036915 -
Gso4g0379 346 PIRSF Cyclin_A_B_D_E 2 340 IPR039361 -
Gso4g0379 346 PANTHER CYCLIN-A3-1-RELATED 21 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0379 Gso-Chr4 3470439 3473092 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0379 3 345 Core Cell Cycle Gene Families AT5G43080 56.268 2.47e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0379 K06627 - gmx:100787417 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0379 4 3470439 3473092 Gso6g0354 6 3336472 3338663 GST