Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0371 ATGGCTGCAATATATACTTTCTCGTTGATCCTTCTCTCTCTTGTTATGTGTCTACAATTATCATATTCAGCAGTGGACACCATGCATCATGGTTCATCCCTCTCAGTGGAGGAACCAAAAGATGTCATGCTCTCACCAAATGCCATGTTCTCTGCGGGCTTTTATGCTGTTGGTGAAAACGCATATTCCTTCGCCGTTTGGTATTCCGAACCCAATGGCCGACCCCCAAACCCAACCTTCGTATGGATGGCAAACCGTGACCAACCAGTGAACGGCAAGCGCTCAAAGTTTTCGCTACTTGGCAACGGCAATCTCGTCTTAAACGACGCTGACGGCTCCGTCGTTTGGTCGACGGACATTGTTTCATCTTCCTCCGCAGTGCATCTATCTCTCGACAACACCGGTAACCTCGTTCTCCGTGAAGCGAATGACAGGCGCGACGTCGTTTTGTGGCAAAGCTTTGATTCCCCTACGGATACCCTTCTGCCTCAGCAAGTGTTCACGAGACACTCGAAACTTGTCTCTTCTAGAAGCGAGACAAACATGTCCTCGGGTTTCTACACCTTGTTCTTCGACAATGACAACGTTCTTCGTCTTCTTTACGATGGTCCTGATGTTTCTGGCCTTTACTGGCCAGATCCATGGTTGGCCCCTTGGGACGCTGGAAGGTCCAGTTACAACAACAGCAGAGTTGCTGTGATGGACACACTCGGCAGTTTTAATTCCTCAGATGATTTCCATTTCATGACTTCTGATTACGGCAAAGTCGTCCAAAGAAGGTTGATCATGGATCACGATGGAAACATTCGTGTTTACAGTCGGAGACACGGTGGAGAGAAATGGTCTGTTACGTGGCAAGCCAAATCAACACCGTGTAGCATTCATGGAATTTGTGGCCCCAATAGTTTGTGCTCTTATCATCAAAATTCTGGCTTGAAGTGCTCTTGCCTTCCCGGGTATAAGAGGAAGAACGATAGCGATTGGTCTTATGGCTGTGAACCGAAAGTTCATCCATCTTGCAAAAAAACAGAGTCTCGGTTCTTGTATGTACCCAACGTTAAGTTATTTGGTTTTGACTATGGGGTCAAGGAAAATTACACGCTCAAGGAGTGTAAGGAGTTATGCCTTCAATTATGCAATTGCAAAGGGATCCAGTATACCTTTTACGATACCAAAGGGACTTATACCTGCTACCCAAAGTTGCAGTTGCGGCATGCCAGTAGTATACAGTATTTTACTGATGATTTGTATTTGAAACTCCCAGCAAGCAGTTCATATTCTAATGAGGGGTCCACAGATGAGCAAGGTCTTAATTGTTCTTCGAGAACGATAAAGATTGAGAGGACATATGACAAGGGTCATGAAAACAGGTATGTTAAGTTCTTGGTTTGGTTTGCAACGGGAGTGGGAGGACTTGAACTTCTGTGCGCATTTGTGGTTTGGTTTTTTCTGGTGAGAACAACGGGGAAACAAGATTCTGGTGCAGATGGGCGGGTCTACGCTCTGGCCGGTTTTAGAAAATTCAGTTATTCTGAGCTGAAACAAGCCACCAAAGGGTTTAGTCAAGAGATAGGAAGGGGTGCAGCAGGGGTTGTATACAAAGGTGTGTTGTTGGATCAACGAGTTGCGGCAGTGAAGAGACTGAAGGATGCTAATCAAGGAGAAGAAGAGTTCCTCGCGGAAGTAAGCTGCATTGGAAGGCTTAACCACATGAACTTGATTGAGATGTGGGGATACTGTGCTGAGGGAAAACACAGGCTATTGGTGTACGAGTACATGGAGCATGGGTCTCTTGCAAAAAATATCGAGTCCAATGCATTGGATTGGACCAAAAGATTTGACATAGCCCTTGGTACAGCAAGATGTCTGGCTTATCTTCATGAGGAGTGTTTGGAGTGGATTCTACACTGTGATGTGAAGCCCCAAAACATACTTCTAGATTCTAATTATCATCCAAAGGTAGCGGATTTCGGGCTGTCCAAGTTGCGAAACAGAAATGAAACTACATACTCTAGTTTTTCAACGATACGAGGAACAAGAGGTTACATGGCTCCTGAGTGGATTTTTAATCTACCAATCACATCCAAAGTTGACGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTCACTGGAAGGAGCATAACAAAGGATATTGAAGCCACAGATAATGGAGTAGTAAACCAGCATCTCAGCATGGTCACGTGGCTTAAAGAGAGGCAGAAAAATGGATTTACGTGTGTTAGTGAAATCTTAGACCCCACGGTAGAAGGAGTATATGATGAGGGTAAGATGGAAACTTTGGCTAGAGTGGCTCTGCAATGCATAGAGGAAGAGAAGGACAAGAGGCCCACCATGAGCCAAGTAGTAGAGATGCTTCAGGAATCTAGCCGCTAA 2397 0.451 MAAIYTFSLILLSLVMCLQLSYSAVDTMHHGSSLSVEEPKDVMLSPNAMFSAGFYAVGENAYSFAVWYSEPNGRPPNPTFVWMANRDQPVNGKRSKFSLLGNGNLVLNDADGSVVWSTDIVSSSSAVHLSLDNTGNLVLREANDRRDVVLWQSFDSPTDTLLPQQVFTRHSKLVSSRSETNMSSGFYTLFFDNDNVLRLLYDGPDVSGLYWPDPWLAPWDAGRSSYNNSRVAVMDTLGSFNSSDDFHFMTSDYGKVVQRRLIMDHDGNIRVYSRRHGGEKWSVTWQAKSTPCSIHGICGPNSLCSYHQNSGLKCSCLPGYKRKNDSDWSYGCEPKVHPSCKKTESRFLYVPNVKLFGFDYGVKENYTLKECKELCLQLCNCKGIQYTFYDTKGTYTCYPKLQLRHASSIQYFTDDLYLKLPASSSYSNEGSTDEQGLNCSSRTIKIERTYDKGHENRYVKFLVWFATGVGGLELLCAFVVWFFLVRTTGKQDSGADGRVYALAGFRKFSYSELKQATKGFSQEIGRGAAGVVYKGVLLDQRVAAVKRLKDANQGEEEFLAEVSCIGRLNHMNLIEMWGYCAEGKHRLLVYEYMEHGSLAKNIESNALDWTKRFDIALGTARCLAYLHEECLEWILHCDVKPQNILLDSNYHPKVADFGLSKLRNRNETTYSSFSTIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMVTGRSITKDIEATDNGVVNQHLSMVTWLKERQKNGFTCVSEILDPTVEGVYDEGKMETLARVALQCIEEEKDKRPTMSQVVEMLQESSR* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0371 798 Pfam S-locus glycoprotein domain 247 323 IPR000858 GO:0048544
Gso4g0371 798 ProSiteProfiles Bulb-type lectin domain profile. 25 152 IPR001480 -
Gso4g0371 798 PIRSF SRK 1 798 IPR024171 GO:0004674
Gso4g0371 798 SMART blect_4 31 157 IPR001480 -
Gso4g0371 798 ProSiteProfiles Protein kinase domain profile. 518 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0371 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Gso4g0371 798 Gene3D Phosphorylase Kinase; domain 1 489 592 - -
Gso4g0371 798 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 6 797 - -
Gso4g0371 798 SMART serkin_6 518 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0371 798 SMART ntp_6 342 420 IPR003609 -
Gso4g0371 798 CDD STKc_IRAK 524 795 - -
Gso4g0371 798 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 175 IPR036426 -
Gso4g0371 798 SUPERFAMILY Protein kinase-like (PK-like) 502 793 IPR011009 -
Gso4g0371 798 Pfam Protein kinase domain 521 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0371 798 Pfam PAN-like domain 340 397 IPR003609 -
Gso4g0371 798 Pfam D-mannose binding lectin 79 172 IPR001480 -
Gso4g0371 798 ProSiteProfiles PAN/Apple domain profile. 340 416 IPR003609 -
Gso4g0371 798 CDD PAN_AP_plant 336 421 - -
Gso4g0371 798 Gene3D - 20 156 IPR036426 -
Gso4g0371 798 CDD B_lectin 44 157 IPR001480 -
Gso4g0371 798 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 6 797 - -
Gso4g0371 798 Gene3D Transferase(Phosphotransferase) domain 1 593 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0371 Gso-Chr4 3402064 3404811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0371 504 793 Receptor kinase-like Gene Family AT3G58690 40.000 3.32e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso4g0371 Pkinase 3.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0371 - - gmx:100819308 1628.99