Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0360 ATGGAAGAAGCAGGTTTAGGAGATTGTTGTTCCTCGAATTCGACGATTACGAGGAAGAGCGATAAGCGAAAGCAGCAACACCAACAACAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCGGAGATTAGAGAACCCAATAAGCGTTCGAGGATCTGGCTGGGTTCTTACGCCACCCCCGTCGCCGCCGCACGCGCCTATGACACCGCCGTCTTCCACCTCCGAGGCCCTTCCGCTCGCCTCAACTTCCCCGAATTGCTGTCCCAGGACGACGACGTTTCGACCCAACAACAGGGCAACATGTCCGCCGATTCAATTCGCAAAAAAGCCACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAGCAATCCTCGTCCTCACACTCCGCTAATTCCAGCCACGTCAGCAGCTCTGACAAACCAGACTTGAACGAGTATCCCAAACCTGAAGATTAG 483 0.5507 MEEAGLGDCCSSNSTITRKSDKRKQQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGNMSADSIRKKATQVGARVDALQTALQQSSSSHSANSSHVSSSDKPDLNEYPKPED* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0360 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 160 - -
Gso4g0360 160 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Gso4g0360 160 MobiDBLite consensus disorder prediction 17 34 - -
Gso4g0360 160 MobiDBLite consensus disorder prediction 96 113 - -
Gso4g0360 160 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Gso4g0360 160 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Gso4g0360 160 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Gso4g0360 160 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 160 - -
Gso4g0360 160 MobiDBLite consensus disorder prediction 96 160 - -
Gso4g0360 160 MobiDBLite consensus disorder prediction 124 149 - -
Gso4g0360 160 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Gso4g0360 160 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Gso4g0360 160 MobiDBLite consensus disorder prediction 1 34 - -
Gso4g0360 160 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Gso4g0360 160 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0360 Gso-Chr4 3259940 3261426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0360 32 160 AP2-EREBP Transcription Factor Family AT2G23340 58.273 1.71e-50 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g0360 AP2 2.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0360 K09286 - gmx:100801528 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0360 4 3259940 3261426 Gso4g0360 4 3259940 3261426 ECH