Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0359 ATGGGCAGCATGAAGGTGCATCAGTTCACACGTGGATTAATCTGGGAGCACGAACCTTTCCTCACACTTGGCTGCAAGAGATTACGCCCTCTTGCTCCCAAGCTTCCCAACACCAAAACTATCACTACCCCTTTCGATCTCAAGAGCTTCATCAGGCCCGAAAGTGGCCCCAGAAAACCCGTTTCCTCTGACGACACTAAGAAGGATCCACCTTCACCCCAAGGCCAGATTGAAACGCACCCAGGAGGGACACGGTGGAATCCTACGCAAGAACAGATAGGCATATTGGAGATGTTGTACAAAGGAGGGATGCGAACTCCGAATGCTCAACAGATAGAGCAGATCACTGTCCAGCTTGGAAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCACGCGAGAGACAAAAGCAGAAGCGCAGCAGCCTTGCATCTTCTCATAGTCCTCGAACTCCCACAATTCACAGTGTTGTTACTTTGGAGACAACAAGGGGGGAAGTGGTAGAGAGAGATCACGAGGAAGATAGTCCGTACAAGAAGAAGTGCAGGAGATGGGTATTTGACTGCTTGGAAGAACAAAACATGTCATCACCTTGTGAACAAGAGGAACATAGAACTCTGGAGCTTTTTCCATTGCACCCGGAAGGCAGATGA 675 0.4889 MGSMKVHQFTRGLIWEHEPFLTLGCKRLRPLAPKLPNTKTITTPFDLKSFIRPESGPRKPVSSDDTKKDPPSPQGQIETHPGGTRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRSSLASSHSPRTPTIHSVVTLETTRGEVVERDHEEDSPYKKKCRRWVFDCLEEQNMSSPCEQEEHRTLELFPLHPEGR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0359 224 CDD homeodomain 84 145 IPR001356 GO:0003677
Gso4g0359 224 MobiDBLite consensus disorder prediction 44 88 - -
Gso4g0359 224 MobiDBLite consensus disorder prediction 204 224 - -
Gso4g0359 224 ProSiteProfiles 'Homeobox' domain profile. 79 144 IPR001356 GO:0003677
Gso4g0359 224 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 224 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Gso4g0359 224 MobiDBLite consensus disorder prediction 67 88 - -
Gso4g0359 224 Pfam Homeodomain 84 143 IPR001356 GO:0003677
Gso4g0359 224 SUPERFAMILY Homeodomain-like 80 150 IPR009057 -
Gso4g0359 224 SMART HOX_1 81 148 IPR001356 GO:0003677
Gso4g0359 224 MobiDBLite consensus disorder prediction 202 224 - -
Gso4g0359 224 Gene3D - 84 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0359 Gso-Chr4 3240067 3241530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0359 4 152 Wox Gene Family AT1G46480 64.634 1.34e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso4g0359 Homeodomain 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0359 - - gmx:100499894 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0359 4 3240067 3241530 Gso4g0359 4 3240067 3241530 ECH