Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0358 ATGGCTCAAGTTCTTGAGAACCCCACCATTGACGCGGCGGCTTCCGGCGCGAACCCCTCGCTGACGACCATCTCGTTGTACGTCGGGGATCTTCACCACGACGTCAACGATCCGCAGCTGTATGATCTCTTCAACCAGGTTGCCCAAGTCGTTTCCGTTCGAATTTGCAGGGACGTGGCCACCCAACAATCCCTTGGTTACGGCTACGTCAATTTCAGCAACGCTCACGATGCCGCAAAAGCAATTGATGTGCTGAATTTCACTCCACTGAACGGCAAAATCATTAGGATAATGTACTCTATTCGGGACCCTAGTGCTCGGAAGAGTGGTGCAGCTAATGTTTTCATAAAGAATTTGGACAAGGCGATTGATCACAAGGCTTTGTACGATACATTTTCGGCTTTTGGGAATATTCTATCTTGCAAGGTTGCGACAGATGCTTCTGGCCAGTCTAAAGGCCATGGTTTTGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCAATTGACAAGTTAAACGGCATGCTGATCAATGATAAGCAGGTCTTTGTGGGTCCTTTCCTGCGGAAGCAGGATAGAGAGAGTGCTCTCAGTGGCACAAAGTTTAATAACGTTTTCGTGAAAAACCTGTTGGATTCAATGACTGAGGCTGACTTGGAGAGAATTTTTGGAGAATATGGAGCTATTACTAGCGCTGTAGTGATGAGAGATGTAGATGGTAAATCAAAAGGTTTTGGTTTTGTCAATTTTGCAAATGTAGACGATGCTGCTAAAGCTGTGGAGGCTCTTAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGGGCAACATGAACAGATTACAAAGGAGACTGTTGATAAATATCATGGTACAAACTTGTATATCAAGAACTTGGATGATAGTGTTGGTGATGAAGAACTCATGGAACTGTTCTCTGAGTTTGGTACGATAACCTCATGCAAGGTTATGCGAGATCCAAATGGAATTAGTAGAGGATCTGGATTTGTTTCATTTTCAATTGCTGAGGGAGCAACTCGGGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGATAGAAGAGCAAGGTTACAGGCACAATTTTCACAATCGAGGCCTGCTGCAATAACCCCTAATGTTTCACCTCGAATGCCTCTATACCCTCTAGGGGCTCCTGCGATAGGACAACAATTTTTGTATGGGCAAGCAGCTCCAGCCACGATACCTCAACATTTTGTTCCTGGAATGAGGCCAGGTGGTGCTCCAAACTTCTATGTTCCACTGGTTCAGCAGGGTCAACAGGGACAGCGCCCAGGAGGACACCGAGGATCAGGTCCTATGCAACAGCTCCAGCAGCCATTGCCATTGATGCACCAACAGATGCTTCCAAGGGGACATGTCTATCGATATCCTTCTGGCTCCAATATGCAAAATATTCAACTGGCAGGAGTACCTGGAGGAATGGTCACTTATGGCATTGGTCAACAAATGCCCACGCAGGCCCTGGCCTCGGCCCTTGCCAATGCTACTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGTTAGTAGATAAGCTGGAGCATGAAGCAGCAGCAAAGGTTACTGGTATGCTCTTAGAGATGGATCAGCCTGAGGTATTACATCTGATTGAGTCACCGGATGCTCTCAAGGCTAAAGTTGTTGAGGCCATGGATGTGTTGAAGAAAGTTACACAGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCACTCTCTCTGAATGATAATGTCGAGTCTTAA 1872 0.461 MAQVLENPTIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATIPQHFVPGMRPGGAPNFYVPLVQQGQQGQRPGGHRGSGPMQQLQQPLPLMHQQMLPRGHVYRYPSGSNMQNIQLAGVPGGMVTYGIGQQMPTQALASALANATPEQQRTMLGEALYPLVDKLEHEAAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLKKVTQQQSNSPADQLASLSLNDNVES* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0358 623 Gene3D - 16 111 IPR012677 -
Gso4g0358 623 Gene3D - 112 185 IPR012677 -
Gso4g0358 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 184 IPR000504 GO:0003723
Gso4g0358 623 SUPERFAMILY PABC (PABP) domain 478 614 IPR036053 GO:0003723
Gso4g0358 623 SUPERFAMILY RNA-binding domain, RBD 203 386 IPR035979 GO:0003676
Gso4g0358 623 SUPERFAMILY RNA-binding domain, RBD 25 192 IPR035979 GO:0003676
Gso4g0358 623 Pfam Poly-adenylate binding protein, unique domain 533 597 IPR002004 GO:0003723
Gso4g0358 623 CDD RRM2_I_PABPs 110 186 IPR045305 -
Gso4g0358 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Gso4g0358 623 Gene3D - 189 287 IPR012677 -
Gso4g0358 623 SMART rrm2_1 307 379 IPR003954 GO:0003676
Gso4g0358 623 SMART rrm2_1 113 185 IPR003954 GO:0003676
Gso4g0358 623 SMART rrm2_1 204 276 IPR003954 GO:0003676
Gso4g0358 623 CDD RRM1_I_PABPs 25 104 - -
Gso4g0358 623 Gene3D - 521 604 - -
Gso4g0358 623 PANTHER RNA BINDING PROTEIN 17 607 - -
Gso4g0358 623 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 25 598 IPR006515 GO:0003723
Gso4g0358 623 SMART poly_2 537 600 IPR002004 GO:0003723
Gso4g0358 623 CDD RRM3_I_PABPs 202 281 - -
Gso4g0358 623 MobiDBLite consensus disorder prediction 601 623 - -
Gso4g0358 623 Gene3D - 288 391 IPR012677 -
Gso4g0358 623 PANTHER POLYADENYLATE-BINDING PROTEIN 17 607 - -
Gso4g0358 623 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 525 602 IPR002004 GO:0003723
Gso4g0358 623 CDD RRM4_I_PABPs 305 383 - -
Gso4g0358 623 SMART rrm1_1 307 379 IPR000504 GO:0003723
Gso4g0358 623 SMART rrm1_1 204 276 IPR000504 GO:0003723
Gso4g0358 623 SMART rrm1_1 113 185 IPR000504 GO:0003723
Gso4g0358 623 SMART rrm1_1 25 98 IPR000504 GO:0003723
Gso4g0358 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Gso4g0358 623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Gso4g0358 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Gso4g0358 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Gso4g0358 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 95 IPR000504 GO:0003723
Gso4g0358 623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0358 Gso-Chr4 3227565 3231902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0358 24 621 Eukaryotic Initiation Factors Gene Family AT2G23350 62.600 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0358 K13126 - gmx:100799386 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0358 4 3227565 3231902 Gso4g0358 4 3227565 3231902 ECH