Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0352 ATGGCAATAGCATATTGGTCATTGACTTCATCAACTCTTTGCAGGACGATGAGTACTCCTCCAGTTGTTGAGCGCGTTTCAGAATGCTTCATCAAGCCGCAGCACTCCAACCATGAATCAAACCAAATCTGCTACTTAACACCTTGGGATATTGCTATGTTGTCTGCTCACTATATCCAAAAGGGCCTTCTCTTCAAGAAGCCCTCATCACCACTTGTTAGTCACAATAATTTCATAGAGAACCTGTTGGAGAAGCTCAAGCACTCTCTTTCTCTCACCCTCTTCCATTTCTATCCTTTGGCTGGTCGCCTTGTCACCCACCAAACCCATGACCCTCCCTTCTATGCTGTTTTCGTTGATTGCAACAACAGTGATGGAGCCAGATTCATCCATGCAACTTTAGATATGACCATATCTGATATCCTCTCTCCCGTTGACGTTCCACCCATTGTTCAATCATTGTTTGACCACCACAAAGCTGTCAACCATGACGGTCACACAATGCCGTTGTTGTCCGTCCAAGTCACTGAATTTGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCACACTCTTGGTGATGGCACTTCTTATTGGAATTTCTTCAACACATGGTCTCAGATCTTTCAAGTTCAAGGCCATGAACATGATGTTCCCATTTCGCACCCACCCATTCACAATCGCTGGTTTCCAGAGGGTTGCGGTCCATTAATCAACCTTCCCTTCAAACATCACGACGATTTTATAAACAGATATGAAACACCGTTGCTGAGAGAGAGAATCTTCCACTTCTCAGCAGAGTCTATTGCAAAACTGAAAGCAAAGGCTAACTCGGAGTGCAACACAACCAAAATCTCATCGTTCCAATCATTATCGGCACTTGTTTGGAGATGCATAACTCGTGCGCGGCGCTTGCCGTATGATCAAAGAACAAGTTGCAAGTTGTCCGCAAACAACAGAACAAGAATGGAACCACCACTGCCTCAGGAGTACTTTGGAAACTCAATTTATACACTGAATGCAGGAACCGCCACCTCAGGGAAATTGCTTGAGAATGGTATAGGTTGGGCAGCATGGAAGTTGCACAAATCGGTTGTAAACCATAACGACAGAGCGGTGTTGGAAACGCTCAAAGAGTGGTTAGAGAGTCCTCTGATATATGATCTTGGTCGTTATTTTGACCCGTACTGTGTGATGATGGGTAGCTCGCCCAGGTTCAACATGTATGGGAATGAGTTTGGAATGGGAAAGGCAGTTGCACTTAGAAGTGGGTATGCCAACAAATTTGATGGAAAAGTAACATCATACCCAGGCCATGAAGGAGGAGGAAGCGTAGATTTGGAAGTGTGTCTTTCGCCAGCTGTAATGAGTGCACTGGAATCGGACGAGGAGTTCATGAATATTGCTCTAGTTTCTGTTTACAATCCTCTCTAG 1434 0.4477 MAIAYWSLTSSTLCRTMSTPPVVERVSECFIKPQHSNHESNQICYLTPWDIAMLSAHYIQKGLLFKKPSSPLVSHNNFIENLLEKLKHSLSLTLFHFYPLAGRLVTHQTHDPPFYAVFVDCNNSDGARFIHATLDMTISDILSPVDVPPIVQSLFDHHKAVNHDGHTMPLLSVQVTEFVDGVFIGCSMNHTLGDGTSYWNFFNTWSQIFQVQGHEHDVPISHPPIHNRWFPEGCGPLINLPFKHHDDFINRYETPLLRERIFHFSAESIAKLKAKANSECNTTKISSFQSLSALVWRCITRARRLPYDQRTSCKLSANNRTRMEPPLPQEYFGNSIYTLNAGTATSGKLLENGIGWAAWKLHKSVVNHNDRAVLETLKEWLESPLIYDLGRYFDPYCVMMGSSPRFNMYGNEFGMGKAVALRSGYANKFDGKVTSYPGHEGGGSVDLEVCLSPAVMSALESDEEFMNIALVSVYNPL* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0352 477 Gene3D - 249 461 IPR023213 -
Gso4g0352 477 Gene3D - 24 236 IPR023213 -
Gso4g0352 477 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 17 469 - -
Gso4g0352 477 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 17 469 - -
Gso4g0352 477 Pfam Transferase family 23 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0352 Gso-Chr4 3184589 3186232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0352 84 460 Monolignol Biosynthesis Gene Families AT5G48930 29.188 8.74e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0352 - - gmx:100787228 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0352 4 3184589 3186232 Gso4g0352 4 3184589 3186232 ECH
Gso4g0352 4 3184589 3186232 Gso6g0336 6 3126334 3129977 GST