Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0351 ATGCAAGGGCAGAGAGGTACAGTTGTTTCAATGCCTGAAACCTTAGAATTTGATTGTGGATCTGCATCTGGCAATTCTACTGCGGATCCGCAAATTTGCTGGAATAATGTGAATCCTGCAGAGAATCAAATTCCTGATTATATACTTTCTCCTTGTGATATGAACTCATCCTATGAGAATTCTATTATTAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCTAGTAATACACCGAATGAGATCAACAATAATGAGCAAAAAAGAGAACTTGGATGGTCATCAACCATTACTGCTGGTGCATTGGCTGGTCCAAGACTAGAAGAAAGGCGCCTTGAACCAACCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCTATCTACATGTGTAGCCCCAATTCTCATTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCGGACAGTGGCAGTGATGATAGTCAACATCTGGAGCTCCCTAACTTAAACAAGTCTAGTGGGTCAGCAATCGAGTGTATACCACCTAATGTTGGATCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGCCTTCCTGGTAGAAGATACTGATGGTAGGCCTAGTTGTTCTCTTGATACTCGGCGGGTCTCTTGTAAACGAAAGGCTGTTGAAGGAAATAATGGACAATCGTCAGATGCTGGGAGTTCTAGCTACAGTCAGCATACGGATGGTAGTGCTTGGCACACCATTCCTACTCAGGATAATGCTGGAAGCAGTTCGAGAAGATCTATTCCCTCAGAAGAGGTAAACGCAAGACTTGGCCTGGGTATCGGGGATGAAGCATCTGAAAATGTTTCTGATTCAAACACTGCAGGATGCTCAGAAAGCTTTCACAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCCAGCAAATTCTGTTCCTCCCACCGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTTTCTCCATCCTCTCAAGTATCACAAAGGCTTCATTCTGTTGATAATTCTATGAACTCGAGGTCAGCACCACCGATAGATAATGTGGTTCCTCAAAGCCAGCCACATGTAATCCATGTCCCTGCTTTGCCCAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCCAGAAACATCCATTCATCAAACTCAATTATATGCCCAGCCAGGGATCAGGAGGATGCAAGCTCAAGAAGAATGTCCAGAAATATGTTAGAACATCCAGTCTTTCAACCTGCAACTGATTTAAGCAATTTAGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGTAAATTTAAGTATTCCAGGAAATGTTGCTTCATCACAGACTGGATCAAATCCAGCTACCAATCCCTCATCTGCCCCAACTTGGGTTTCTCCTCCTAATCCTCCACAGCATCCACAGAGGTTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCCAGTTCTGATGCTACTGGAAGTCCAAGCAATAATTTTTCTTCCTTGCGCTCTGGTTTTTCTACATCTGAACCAAGGGCGTTATCATCTGGGAGTGGGGCAAACCCGAGATCATCTTCATGGTTGGAGAGGCAAGGAGGTAGTGAATTTGGAATTCCTTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTTTTGGGCCTTATGCGTAGAGGTGGGAACGTGCGATTTGAGGATGTTGTGATCCTTGAGCATCAATCATTTCTTTCTAGAATAGCTGATGTTCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAACCCTATCGAAACTCTTGAAACAGAGAAAACACTCGGTTGAAAAAGGGTCTGAGACTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGGAATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAGCAGCTGTATCAAACAGTGGCTAATGCAAAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2124 0.4331 MQGQRGTVVSMPETLEFDCGSASGNSTADPQICWNNVNPAENQIPDYILSPCDMNSSYENSIINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWSSTITAGALAGPRLEERRLEPTNALSLDNVNTGPIYMCSPNSHLMSQNLNLNAGLADSGSDDSQHLELPNLNKSSGSAIECIPPNVGSGSFLLPSGNNAFLVEDTDGRPSCSLDTRRVSCKRKAVEGNNGQSSDAGSSSYSQHTDGSAWHTIPTQDNAGSSSRRSIPSEEVNARLGLGIGDEASENVSDSNTAGCSESFHRNFRLRLNPSNPANSVPPTAFSTGSMIRHSGVSPSSQVSQRLHSVDNSMNSRSAPPIDNVVPQSQPHVIHVPALPRNRQSFRWSGGSSSRNIHSSNSIICPARDQEDASSRRMSRNMLEHPVFQPATDLSNLVQNPTVRASSSSSVNLSIPGNVASSQTGSNPATNPSSAPTWVSPPNPPQHPQRLSEYVRRSLFSPSSDATGSPSNNFSSLRSGFSTSEPRALSSGSGANPRSSSWLERQGGSEFGIPYSLRTLAVASEGSSRLVSELRNVLGLMRRGGNVRFEDVVILEHQSFLSRIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETLSKLLKQRKHSVEKGSETDAEPCCVCQEDYGDGNDIGTLDCGHDFHSSCIKQWLMQKNLCPICKTTGLAT* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0351 707 MobiDBLite consensus disorder prediction 434 467 - -
Gso4g0351 707 CDD RING-H2_TTC3 659 701 - -
Gso4g0351 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 706 IPR045191 GO:0061630
Gso4g0351 707 Pfam Ring finger domain 660 701 IPR001841 -
Gso4g0351 707 ProSiteProfiles Zinc finger RING-type profile. 660 701 IPR001841 -
Gso4g0351 707 MobiDBLite consensus disorder prediction 221 266 - -
Gso4g0351 707 MobiDBLite consensus disorder prediction 379 401 - -
Gso4g0351 707 MobiDBLite consensus disorder prediction 153 173 - -
Gso4g0351 707 MobiDBLite consensus disorder prediction 223 266 - -
Gso4g0351 707 SMART ring_2 660 700 IPR001841 -
Gso4g0351 707 MobiDBLite consensus disorder prediction 434 538 - -
Gso4g0351 707 MobiDBLite consensus disorder prediction 379 410 - -
Gso4g0351 707 MobiDBLite consensus disorder prediction 489 538 - -
Gso4g0351 707 SUPERFAMILY RING/U-box 649 703 - -
Gso4g0351 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 704 IPR013083 -
Gso4g0351 707 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0351 Gso-Chr4 3165967 3174808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0351 217 707 C3H Transcription Factor Family AT2G15530 37.333 5.51e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0351 - - gmx:100784575 1376.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0351 4 3165967 3174808 Gso4g0351 4 3165967 3174808 ECH