Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0348 ATGGAGCAGTTAAAGCCGGAGGAGTACCAGATGGACGTGATGACTATGATGTTGCAGCAACTCCCTCAACTCTCTGAACCATACACTCACACCATGGAAGGATTTCATCCCCCAGAAGATCACTTCTATGGTAACAACACTATGCCACTAGCAGATTTAATTGATAACAATAACCCTCACAGTTCCATGCCTTGGTCCTCCTCATACTCGTTCACACACTTACCATCATCCACAATCTCTTTCTCCAATAATAACCCAATAATGCTTCAAGAACAACAACAACATAGCCCGAGTGAAACATACGAGGATGCAAATGCAAACCCTTACGGAGGTGAGAAGCGGAGCTCGATGGCGGCGATGAGGGAGATGATATTCAGAATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGCAGCCGAAGCGGAGGAACGTGAAGATTTCGAAGGATCCACAGAGCGTGGCGGCGCGGCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATACTGCAGAGACTGGTCCCGGGAGGGACTAAGATGGACACTGCTTCCATGTTGGACGAGGCCATTCACTACGTCAAGTTTCTCAAAACGCAGGTTCAGTCACTCCAACGCGCTTCCTCCGCTAACAACAATATTAGGCCACTTGGTACTAGTACTGTTAACGCAACAGGAATAGGGTTCCCTGTTGCTATGTCTACCACTTCCAATTCCACCCCTTATTTTCCTCTGCCTAAACCTTACCAAGCTCGCCACATGGAGAATATGCACGATAGATATGATTAA 795 0.4855 MEQLKPEEYQMDVMTMMLQQLPQLSEPYTHTMEGFHPPEDHFYGNNTMPLADLIDNNNPHSSMPWSSSYSFTHLPSSTISFSNNNPIMLQEQQQHSPSETYEDANANPYGGEKRSSMAAMREMIFRMAAMQPIHIDPESVKQPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLQRASSANNNIRPLGTSTVNATGIGFPVAMSTTSNSTPYFPLPKPYQARHMENMHDRYD* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0348 264 Gene3D - 149 218 IPR036638 GO:0046983
Gso4g0348 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 209 IPR036638 GO:0046983
Gso4g0348 264 SMART finulus 156 205 IPR011598 GO:0046983
Gso4g0348 264 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Gso4g0348 264 MobiDBLite consensus disorder prediction 140 162 - -
Gso4g0348 264 MobiDBLite consensus disorder prediction 91 111 - -
Gso4g0348 264 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 2 261 - -
Gso4g0348 264 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 2 261 IPR045843 GO:0003700|GO:0006355
Gso4g0348 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0348 Gso-Chr4 3116646 3117927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0348 110 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 75.630 3.20e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso4g0348 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0348 - - gmx:100815041 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0348 4 3116646 3117927 Gso4g0348 4 3116646 3117927 ECH
Gso4g0348 4 3116646 3117927 Gso6g0330 6 3059765 3061021 GST