Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0346 ATGAATTTCAAGAGCTTTGGAAACGAGGCCGGCGGCGGCGGAGGGAGACAGGCGGGGAACTTCTCGCTGACGCGGCAGCCGTCGGTGTACTCGCTGACGTTCGACGAGTTCATGAACAGCATGGGAGGTTCGGGGAAGGACTTTGGGTCCATGAACATGGACGAGTTGCTGAAGAACATCTGGACCGCGGAGGAGGTTCAGACAATGGCGTCGGCGGGAGTGGCCGCCGATGACGGCGGCGCCGGCGTCAGCCATTTGCAGCGGCAGGGGTCGCTGACGTTGCCGCGGACCCTAAGCCAGAAGACCGTTGATGAGGTTTGGAAGGACATTTCGAAAGACCACGGTGGGCCCAACTTGGCCCAGACGCAGAGGGAGCCCACGCTGGGAGAGGTGACGTTGGAGGAGTTTTTGGTCAGAGCTGGTGTTGTTAGAGAAGATGCCAAACCAAACGAAAGCGTTTTCGTAGATCTGTCTCGCGTTGGGAATAATAGTGGTTTGGGGTTGGGGTTTCAGCAGAGGAACAAGGTTGCTGCTGCTACCGGTTTGATGGGTAACCGGTTGAACAATGATCCGCTGGTGGGTCTTCAGCCTTCTGCTAACTTGCCTTTGAATGTTAATGGGGTGAGAACATCCAATCAGCAGCCACAGATGCAGAGTCCACAGTCTCAGCATCAGCATCAGCATCAGCAACAACAGCAGCAGATATTTCCTAAACAGAGTGCTATGTCTTATGCAGCTGCTCAGATGCCTCAGGGAATGGTGAGGGGTGGGGTTGTGGGGCTTGGTGATCAGGGTTTGAGTGTGCAAGGTGGAGGGATTGGTATGGTTGGGTTGGCACCTGGGTCTGTTCATGTAGCTACTGGCTCTCCTGCTGCTAACCAGCTGTCCTCTGGTGATAGGATTGGGAAGAGCAATGGCGATTCCTCGTCTGTGTCGCCGGTTCCTTATGTCTTTAATGGCAGTCTGCGAGGAAGGAAGAACGGGGGAGCTGTGGAGAAGGTGATTGAGAGGAGGCAGAGAAGGATGATAAAGAATAGAGAGTCAGCTGCCAGGTCGCGGGCTCGCAAACAGGCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGGCAGAAATTATGGAAATTCAGAAAAATCAAGTTAAGGAAATGATGAATTTGCAACGAGAAGTGAAGAGAAGACGCCTAAGAAGAACACAAACTGGTCCGTGGTAG 1248 0.5272 MNFKSFGNEAGGGGGRQAGNFSLTRQPSVYSLTFDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMASAGVAADDGGAGVSHLQRQGSLTLPRTLSQKTVDEVWKDISKDHGGPNLAQTQREPTLGEVTLEEFLVRAGVVREDAKPNESVFVDLSRVGNNSGLGLGFQQRNKVAAATGLMGNRLNNDPLVGLQPSANLPLNVNGVRTSNQQPQMQSPQSQHQHQHQQQQQQIFPKQSAMSYAAAQMPQGMVRGGVVGLGDQGLSVQGGGIGMVGLAPGSVHVATGSPAANQLSSGDRIGKSNGDSSSVSPVPYVFNGSLRGRKNGGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELQKKQAEIMEIQKNQVKEMMNLQREVKRRRLRRTQTGPW* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0346 415 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 340 355 IPR004827 GO:0003700|GO:0006355
Gso4g0346 415 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 415 - -
Gso4g0346 415 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 335 386 IPR004827 GO:0003700|GO:0006355
Gso4g0346 415 CDD bZIP_plant_BZIP46 337 391 - -
Gso4g0346 415 Coils Coil 353 405 - -
Gso4g0346 415 Gene3D - 335 392 - -
Gso4g0346 415 SUPERFAMILY Leucine zipper domain 337 386 IPR046347 GO:0003700|GO:0006355
Gso4g0346 415 MobiDBLite consensus disorder prediction 1 22 - -
Gso4g0346 415 SMART brlzneu 333 398 IPR004827 GO:0003700|GO:0006355
Gso4g0346 415 MobiDBLite consensus disorder prediction 198 242 - -
Gso4g0346 415 Pfam bZIP transcription factor 337 387 IPR004827 GO:0003700|GO:0006355
Gso4g0346 415 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 12 415 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0346 Gso-Chr4 3097712 3102528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0346 23 369 bZIP Transcription Factor Family AT1G45249 52.381 8.12e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso4g0346 bZIP_1 1.2e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0346 K14432 - gmx:100819313 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0346 4 3097712 3102528 Gso4g0346 4 3097712 3102528 ECH
Gso4g0346 4 3097712 3102528 Gso6g0328 6 3035416 3040539 GST