Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0332 ATGGTCTCAGAGGAGGTGACAATGAGGATTCTCAGAGGTGAAGAGGGGAGGGTTGGTAAGGATAGAGAGAAAGAGGCCGTTCCCGATGGTCACGTCACGACTTATGATAAGCACAGGGATTATGCGAATCGGGTGTATGCTTCAGATGAGGGCCTTCCAGTCCACTTCTGCAACAGTCTTCCAAAAAAGGACGAAGTGGTGACTTTGGTTGATGAGGATGGGATTGAGTATTCGACAATATATTTGGCAGGAAAAACAGGACTTAGTGGTGGATGGAGAGGTTTTGCAATTGCTCATGACCTAACTGATGGGGACGCTTTAATTTTTCAATTAATTAAGCGCACCACATTCAAGGTGTACATTGTTAGAGCAGATTGTCCTCCAGAGGATAAACAGCTTGAGTGA 405 0.4543 MVSEEVTMRILRGEEGRVGKDREKEAVPDGHVTTYDKHRDYANRVYASDEGLPVHFCNSLPKKDEVVTLVDEDGIEYSTIYLAGKTGLSGGWRGFAIAHDLTDGDALIFQLIKRTTFKVYIVRADCPPEDKQLE* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0332 134 SMART B3_2 42 125 IPR003340 GO:0003677
Gso4g0332 134 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 52 130 - -
Gso4g0332 134 SUPERFAMILY DNA-binding pseudobarrel domain 51 125 IPR015300 -
Gso4g0332 134 Pfam B3 DNA binding domain 52 124 IPR003340 GO:0003677
Gso4g0332 134 Gene3D - 29 125 IPR015300 -
Gso4g0332 134 ProSiteProfiles B3 DNA-binding domain profile. 35 125 IPR003340 GO:0003677
Gso4g0332 134 CDD B3_DNA 52 123 IPR003340 GO:0003677
Gso4g0332 134 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 52 130 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0332 Gso-Chr4 2995784 2999788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0332 51 133 B3 DNA Binding Superfamily AT5G42700 58.824 3.21e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso4g0332 B3 6.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0332 - - gmx:102663067 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0332 4 2995784 2999788 Gso4g0332 4 2995784 2999788 ECH
Gso4g0332 4 2995784 2999788 Gso6g0316 6 2937293 2941469 GST