Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0331 ATGGTGGCAGCAATAGCATACGAGGAGAGTCGTCGCAAGAGAGTGGAAGAGAACAGAAAGAGGATGGAAGCCCTCAATCTCCCCCTCCTCTCTCAAGCTCTTCACAAATCCCCTTCTCCCAAATCCTCACCGCTGAAGCAGGTCAAGAATCGCACCATTCAGAAAGAGTTGGTTGTTGTCCGAAGGTCTAGCCGTGTGGCAAATTTGCCCACTCCTGTTTACAAAGAAGTGGTTGTTGATCGCGTGACAATACCTAGAAGAACCCTTGGTAGACCTTACAATAGACACAGGGATTATGCCAATAGGGTATATGCTTCTGATGAAGCCAGAGAGGAAGCATTGGAGAAAGCAGAAACCTTAATGTCGGGTCTAGAATCTGAACATCCAGCCTTCATAAAGTCAATGCTACAATCCCACATCAGCGGGGGATTCTGGCTGGGCCTTCCAGTCCATTTCTGCAAGAGCAATCTTCCAAAAGGGGACGAAGTGATGACTTTGATTGATGAGGATGGGAATGAGTATCCAACAATATATTTGGCACGAAAAACAGGACTTAGTGGTGGATGGAAAGGTTTTGCGGTTGGTCATGACCTAGCTGACGGAGATGCTGTAATTTTTCAATTAATTAAGCACACTGCATTCAAGGTGTACATTATTAGAGCGAATAGTCCACCAGAGGATAAGTGA 687 0.4585 MVAAIAYEESRRKRVEENRKRMEALNLPLLSQALHKSPSPKSSPLKQVKNRTIQKELVVVRRSSRVANLPTPVYKEVVVDRVTIPRRTLGRPYNRHRDYANRVYASDEAREEALEKAETLMSGLESEHPAFIKSMLQSHISGGFWLGLPVHFCKSNLPKGDEVMTLIDEDGNEYPTIYLARKTGLSGGWKGFAVGHDLADGDAVIFQLIKHTAFKVYIIRANSPPEDK* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0331 228 Pfam B3 DNA binding domain 131 221 IPR003340 GO:0003677
Gso4g0331 228 SMART B3_2 131 222 IPR003340 GO:0003677
Gso4g0331 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN 2 223 - -
Gso4g0331 228 Coils Coil 5 25 - -
Gso4g0331 228 ProSiteProfiles B3 DNA-binding domain profile. 131 222 IPR003340 GO:0003677
Gso4g0331 228 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 223 IPR044837 -
Gso4g0331 228 CDD B3_DNA 129 220 IPR003340 GO:0003677
Gso4g0331 228 SUPERFAMILY DNA-binding pseudobarrel domain 125 222 IPR015300 -
Gso4g0331 228 Gene3D - 105 223 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0331 Gso-Chr4 2990009 2995116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0331 3 222 B3 DNA Binding Superfamily AT3G19184 52.679 2.13e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso4g0331 B3 1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0331 - - gmx:100797091 442.58