Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0316 ATGGCTATTCGTGTAACCTTTTCCTTTTCGGGCTATGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGTTGCGTCCAGGAATGCTGGATCCGTACGCGCCTCTCTGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGAGTCCGCAATTTTGCCGGGCCCAAGCCCAACTGCTGGGCCCAGTCCACTTACTCCACCCTCACCGGGGAGTTCCTCGGCGACGGCTGCAAGAGCCCAATCATATTGGGCCTGATTTCGATCATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCCTTCAAAACCACTTCGATCGTTCCCTTCTTGCCTGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCACTTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGACACCGAATCCAATTTTGCCAAGACTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTGTTACTGTTAGTTTGCTCTTTAAATCGTCCTTGGCTGAACCAAGATCAATTCCCTCTTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTCTAACCGAGAAGGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTTAAAGCGCCTCCTTGTTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTACTGGTAAATGGTGCTGCTGAAGAACGGCAATTTGTAGTAGAGCCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGACAATCGGAACAACAGCTTTGATTCTCATAACTGGGGCCCTCTCCCAGTTGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGTATCTGACACTGATACCCTAAGTAAACTCCCACCTGGGAACAAACCTGTGGCAATTTCTTGA 1089 0.5179 MAIRVTFSFSGYVAQSLASSAGVRVANSRCVQECWIRTRLSGATQKTDLDSSAGGVRNFAGPKPNCWAQSTYSTLTGEFLGDGCKSPIILGLISIMKSTAGVSGSSAAAAGIFGISPFKTTSIVPFLPGSKWLPCNESVPDPTTSWEVDKGGTRRVVSDTESNFAKTSWLSRLMNVCSEDAKAAFTAVTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVLTEKVSFFFRKPDVSDIVIFKAPPCLEEFGFSSSDVFIKRIVAKAGDTVEVRDGKLLVNGAAEERQFVVEPLAYEMDPMVVPEGYVFVMGDNRNNSFDSHNWGPLPVENIVGRSMFRYWPPSKVSDTDTLSKLPPGNKPVAIS* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0316 362 MobiDBLite consensus disorder prediction 342 362 - -
Gso4g0316 362 Pfam Signal peptidase, peptidase S26 181 338 IPR019533 GO:0004252|GO:0006465
Gso4g0316 362 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 346 - -
Gso4g0316 362 Gene3D Umud Fragment, subunit A 194 351 - -
Gso4g0316 362 PANTHER SIGNAL PEPTIDASE I 1 346 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso4g0316 362 CDD S26_SPase_I 200 332 IPR019533 GO:0004252|GO:0006465
Gso4g0316 362 ProSitePatterns Signal peptidases I serine active site. 206 213 IPR019756 GO:0004252|GO:0016021
Gso4g0316 362 PRINTS Bacterial leader peptidase 1 (S26A) family signature 197 213 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso4g0316 362 PRINTS Bacterial leader peptidase 1 (S26A) family signature 256 268 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso4g0316 362 PRINTS Bacterial leader peptidase 1 (S26A) family signature 300 319 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso4g0316 362 ProSitePatterns Signal peptidases I signature 3. 305 318 IPR019758 GO:0004252|GO:0016021
Gso4g0316 362 TIGRFAM sigpep_I_bact: signal peptidase I 184 339 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso4g0316 362 SUPERFAMILY LexA/Signal peptidase 198 343 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0316 Gso-Chr4 2835381 2837871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0316 209 339 MADS-box Gene Family AT1G29960 33.083 1.40e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0316 K03100 - gmx:100817525 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0316 4 2835381 2837871 Gso4g0316 4 2835381 2837871 ECH
Gso4g0316 4 2835381 2837871 Gso6g0298 6 2770070 2772658 GST