Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0315 ATGGCCTCGTGTTGCTCTCTTCTATTGCTCTCCTTAATATTCCTTCTTTCATCATCTGCCTCTCATGCACTTTCCAATGCCGAAGTCTCTTTCATTGCTCGTCGCCAATTGTTGCACTTACACGAGAATGATGAATTATCTGACAACTACGTAGATAATTATGAAACAAATTTAACTTTCTCCAACCCCAGACTAAAACTTGCATACATTGCACTTGAGGCATTGAAAAAAGCAATATACTCAGACCCATCAAATTTCACAGCTAATTGGGAGGGCCAAAATGTTTGCTCTTATAATGGAGTTTTTTGTGAAAAGGCTCTAGATGATCCAAAGATTGACGTTGTAGCAGGGATTGACCTTAACCATGCAGACATCGCAGGTTACATTCCCCCCGAAATCGGATTGTTAACCGACCTTGCACTTTTTCATATAAACTCAAACAGGTTTTGTGGGGTTCTCCCAAAAAGTTTTTCCAAGCTTAAGCTTCTTTATGAGGCAGACATCAGCAACAATCGCTTTGTTGGGCGATTCCCTGAGCCTGTGCTTCCAATTCCAGACCTTAAATTCCTTGACCTCAGGTTCAATAACTTTGAAGGGGAACTACCTTCTGAGCTTTTCAACAAAAGCCTCGACGCTATCTTTTTGAACAATAATCGCTTCACGTCCACAATTCCTCAGAACCTGGGATTTTCTCCAGCTTCAGTTGTGGTTTTTGCCAATAACAATCTCACGGGTTGCGTGCCTTCAAGCATTGGCAACATGACAAAGACACTGAACGAGTTTGTTTTGACCAATAACAACCTCACTGGTTGCTTGCCGGCAGAGATCGGAAAGCTCGAAAAAGTTACTGTGTTTGACATAAGCCAAAACAATTTTGTTGGCATGTTGCCAAGGACCTTAAATGGGCTTAAGAGCGTGGAGCACTTATCCATTGAACACAATAAGCTCACAGGTTTTGTCCCACGTAATGTTTGCAGCTTGTCCAATTTGGTCAACTTCACATTCTCTTATAACTATTTCAATGGTGAGGAAGAAGGTTGTGTGCCTCCTAAGAAGGATGTTGTGTTGGATGATGAGAGCAATTGCATACCGGATAGGCCAAAACAAAAGGTCGCAAACGTTTGCAATGTGGTGATAAGTAAGCCTGTGGATTGTAGCAAAGCGCAGTGTGGAAGTGGGAACCCATCTCATTCTTCCAATCCTCCAACAACACCATCTGGGTCACAGCCTTCCAATCCTCCTAAAGTTGAGAAACCTACACCAACACCAACACCAAAGCCACAACCTCAACCTACCCCTTCAACACCAAAGCCCCAACCCAACCCAACCCCTTCTCCTTCTAATCCTCCAACACCAAAGCCACAACCCCCTTCTACCCCTAACCCTCCAACACCAAAGCCACAAGAACCCAAACCTACCCCTTTTCCCTCAAATCCTCCAACACCAAAGCCACAAGAACCCAAACCTGCCCCTTCTCCCTCAAATCCTCCAACACCAAAGTCACAAGAACCCAAACCTACCCCTTCCCCCTCAAATCCTCCAACACCAAAGTCACAAGAACCCAAACCTACCCCTTCTCCCTCAAATCCTTCAACACCAAACCCACAACCACCCAAAGCAACCCCTTCTCCCTCCAACCCTCAAACACCAAACCCACAACCACCTAAAGCAAGTCCATCTCCATTCAATCCTCCAACACCACAAGCACCCAAAGCAACACCACCACCATCACCTGAGGAAGATCCTCATAGGGAAGCACCCAAACAACGACACAGACCTCCACACTCTCTGCCTCCACCAGTTCAGTCTCCTCCTCCACCTGTTCACTCCCCACCACCACCTGTACATTCTCCTCCTCCACCTGTTCACTCACCACCTCCACCAGTTCACTCCCCACCACCACCTGTTCACTCCCCACCACCACCTGTACATTCTCCTCCTCCACCTGTTCACTCCCCACCACCACCTGTACATTCTCCTCCTCCACCTGTTCACTCCCCACCACCACCTGTACATTCTCCTCCTCCACCTGTACATTCTCCTCCTCCACCAGTTCACTCCCCACCACCACCTGTCCACTCTCCACCACCACCACCCGTCCATTCTCCACCTCCACCAGTTCACTCCCCACCACCACCACCCGTCCACTCTCCACCACCACCACCCGTCCATTCTCCACCACCACCACCCGTACATTCTCCACCCCCGCCAGTTCATTCTCCACCTCCACCAGTTCACTCTCCTCCTCCACCAGTTCACTCCCCACCACCTCCTGTCCACTCTCCACCACCACCACCGGTCCATTCTCCACCCCCACCAGTTCATTCTCCACCACCACCCGTCCATTCTCCACCCCCACCAGTTCATTCTCCACCACCACCCGTCCATTCTCCACCCCCACCAGTGTACTCTCCACCACCACCAGTACACTCTCCACCACCTCCTGCACCATCAGTTTCACCTCCTCCTGATGAAGATATTATTCTTCCCCCTCACTTCGGCTCTTCTTATGCTTCACCCCCTCCACCTATCATCGCTGGATACTAA 2547 0.4904 MASCCSLLLLSLIFLLSSSASHALSNAEVSFIARRQLLHLHENDELSDNYVDNYETNLTFSNPRLKLAYIALEALKKAIYSDPSNFTANWEGQNVCSYNGVFCEKALDDPKIDVVAGIDLNHADIAGYIPPEIGLLTDLALFHINSNRFCGVLPKSFSKLKLLYEADISNNRFVGRFPEPVLPIPDLKFLDLRFNNFEGELPSELFNKSLDAIFLNNNRFTSTIPQNLGFSPASVVVFANNNLTGCVPSSIGNMTKTLNEFVLTNNNLTGCLPAEIGKLEKVTVFDISQNNFVGMLPRTLNGLKSVEHLSIEHNKLTGFVPRNVCSLSNLVNFTFSYNYFNGEEEGCVPPKKDVVLDDESNCIPDRPKQKVANVCNVVISKPVDCSKAQCGSGNPSHSSNPPTTPSGSQPSNPPKVEKPTPTPTPKPQPQPTPSTPKPQPNPTPSPSNPPTPKPQPPSTPNPPTPKPQEPKPTPFPSNPPTPKPQEPKPAPSPSNPPTPKSQEPKPTPSPSNPPTPKSQEPKPTPSPSNPSTPNPQPPKATPSPSNPQTPNPQPPKASPSPFNPPTPQAPKATPPPSPEEDPHREAPKQRHRPPHSLPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPPVHSPPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPAPSVSPPPDEDIILPPHFGSSYASPPPPIIAGY* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0315 848 PRINTS Proline rich extensin signature 393 405 - -
Gso4g0315 848 PRINTS Proline rich extensin signature 411 427 - -
Gso4g0315 848 PRINTS Proline rich extensin signature 431 443 - -
Gso4g0315 848 PRINTS Proline rich extensin signature 445 466 - -
Gso4g0315 848 MobiDBLite consensus disorder prediction 577 592 - -
Gso4g0315 848 Gene3D Ribonuclease Inhibitor 69 237 IPR032675 -
Gso4g0315 848 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 725 843 - -
Gso4g0315 848 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 5 582 - -
Gso4g0315 848 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Gso4g0315 848 MobiDBLite consensus disorder prediction 406 576 - -
Gso4g0315 848 MobiDBLite consensus disorder prediction 387 405 - -
Gso4g0315 848 MobiDBLite consensus disorder prediction 387 848 - -
Gso4g0315 848 Gene3D Ribonuclease Inhibitor 238 377 IPR032675 -
Gso4g0315 848 MobiDBLite consensus disorder prediction 593 828 - -
Gso4g0315 848 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 5 582 - -
Gso4g0315 848 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 725 843 - -
Gso4g0315 848 SUPERFAMILY L domain-like 77 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0315 Gso-Chr4 2831289 2833971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0315 23 496 Trihelix Transcription Factor Family AT4G33970 56.341 1.05e-175 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0315 - - gmx:100780677 768.459