Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0309 ATGATCACTAAACAAAAACAAGAACAACTTCTCTTGTTCCTGATCTTAGTTTTGGGGAAAATAGCATTTTTCATTATTCCAACAACGAATGGCCAAGTGAACCACCACCGCCAGTGCCGCCAAACATGCGGTTCCTCCAAACCCGTCCCTTACCCATTCGGATTCTCCTCCGGCTGCGCAATCCGCCTGAACTGCACCGCCGGCGTGGCCTCCGTCGGAGAATTCCCGGTCAAAGTCAACACAGACAGCTTGATCGTGAGCATCGAAGCCCAATGCAATCGCTCATTCGATAGCTTCCACCATCTGTTCAGCCACAAATATGCACCCACTTCGCGAAACGTGATCCTCTTAGACAACTGCACCGCTACGCCTTTACCCTGCTCCATTCCGGAGACTCTGGTGCGGACCCACTTCGAATCCGTGGGCTGTGGCAACGCCTCCGGCACCGGCGAATTGAGCTGCTACTTCGAGAAAATAACCAACGGATTCATGGATCAGAGAATGTTGGATGAAATCCGGTGCAAGTACTTTATGTCGTCCCTTTCAGTGCCAGATATCAAAAACATTTCGGGTACTGCGCCTTTGTCTTTGGGTGTAAATGTAATCGAACTTGGATGGTGGCTTCAGGGAGATCGATGTTTATGTTCTGATCACGCCAATTGTACCACGCTTCAGTCGCCGGTGGACAGAAAACCAGGGTTCCGGTGTCGCTGCCGTGACGGGTTCGTCGGCGATGGGTTTTTGGTCGGAACTGGTTGCCAGAAAGCCTCGTCATGCAACCCAGCGAAGTACATGTCTGGTCGATGTGGAGGAACAACGAGATTCATAGTCTTAATTGGGTTTGTTATTGGCGTTTCACTGATGGTTACTTTGGGTTCACTATGTTGTTTCTACCGCCGACGCTCCAAATTGAGAGTGACAAAGAGCACGAAAAGGCGTTTAACCGAAGCCACTGGCAACAATAGTGTTCCTATCTATCCCTACAAAGACATTGAGAAAGCCACGAATAGTTTCTCAGAGAAGCAACGGCTTGGAACTGGAGCATACGGGACTGTTTATGCTGGGAAACTCTACAACGATGAATGGGTTGCCATCAAAAGGATAAAACACAGAGACACTGACAGTATTGAGCAAGTAATGAACGAGATCAAGCTCCTTTCTTCAGTGAGCCACACCAATTTAGTTCGTTTGTTGGGTTGCTCCATTGAATACGGAGAACAAATCCTAGTGTACGAGTTCATGCCCAATGGAACACTGAGTCAGCATTTGCAGAAGGAGAGAGGGAGTGGTCTTCCTTGGCCAGTTCGACTCACGATTGCCACTGAAACTGCACAAGCCATAGCACATCTTCATTCAGCCATTTGTCCCCCCATTTACCACAGGGACATCAAGTCCAGTAACATACTCTTGGACTACAATTTCAGGTCCAAAGTTGCAGATTTTGGTCTTTCTAGACTTGGGATGACCGAAATATCCCACATTTCGACAGCCCCACAAGGAACCCCCGGCTACGTTGATCCACAGTACCATCAAGACTTTCACCTCTCTGACAAGAGCGACGTGTATAGCTTGGGTGTTGTTCTTGTTGAGATCATAACGGGACAGAAAGTGGTGGACTTTTCACGCCCACATAACGAAGTGAACCTGGCTTCTCTTGCTGCGGATAGGATCGGGAAAGGGCTTTTAAATGAGATTATAGACCCATTCCTTGAAGCCGAAGCAAGAAGTGACGCATGGACTCTTTCCTCCATACACAAGGTGGCTGAGCTTGCATTCAGATGCCTTGCGTTCCATAGGGACATGAGGCCTTCGATGACAGAAGTGGCTTCAGAGTTAGAGCAACTTAGTTTGAGTAGGTGGACAACAATGGGAGACAACAATTGTGCAACCTCAACGGAATTGTCCTCTTGCTCTTCCTCCTCAAATGAAAGTGAGAAACCACTAAGCACCGGAATGAAGAATGCTGGAGGGGCAAAGGGTAAAGGCCACCTCAAGCTCCAAACTGGGCCTGTTCATTTAATGTCATTACAAAGGCCCAATAGTAACTCACCGGTCTCGGTGCAAGACCAAGAGCTGTGGTTGAGTGAGCAGAGTTCTCCTTCATCGAATAGTTTTCCAAGCAAGTCATTTGATTGA 2136 0.4817 MITKQKQEQLLLFLILVLGKIAFFIIPTTNGQVNHHRQCRQTCGSSKPVPYPFGFSSGCAIRLNCTAGVASVGEFPVKVNTDSLIVSIEAQCNRSFDSFHHLFSHKYAPTSRNVILLDNCTATPLPCSIPETLVRTHFESVGCGNASGTGELSCYFEKITNGFMDQRMLDEIRCKYFMSSLSVPDIKNISGTAPLSLGVNVIELGWWLQGDRCLCSDHANCTTLQSPVDRKPGFRCRCRDGFVGDGFLVGTGCQKASSCNPAKYMSGRCGGTTRFIVLIGFVIGVSLMVTLGSLCCFYRRRSKLRVTKSTKRRLTEATGNNSVPIYPYKDIEKATNSFSEKQRLGTGAYGTVYAGKLYNDEWVAIKRIKHRDTDSIEQVMNEIKLLSSVSHTNLVRLLGCSIEYGEQILVYEFMPNGTLSQHLQKERGSGLPWPVRLTIATETAQAIAHLHSAICPPIYHRDIKSSNILLDYNFRSKVADFGLSRLGMTEISHISTAPQGTPGYVDPQYHQDFHLSDKSDVYSLGVVLVEIITGQKVVDFSRPHNEVNLASLAADRIGKGLLNEIIDPFLEAEARSDAWTLSSIHKVAELAFRCLAFHRDMRPSMTEVASELEQLSLSRWTTMGDNNCATSTELSSCSSSSNESEKPLSTGMKNAGGAKGKGHLKLQTGPVHLMSLQRPNSNSPVSVQDQELWLSEQSSPSSNSFPSKSFD* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0309 711 Pfam Protein kinase domain 338 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0309 711 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 29 654 - -
Gso4g0309 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Gso4g0309 711 SUPERFAMILY Protein kinase-like (PK-like) 316 613 IPR011009 -
Gso4g0309 711 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 654 IPR045274 GO:0007166
Gso4g0309 711 MobiDBLite consensus disorder prediction 631 649 - -
Gso4g0309 711 Gene3D Phosphorylase Kinase; domain 1 299 413 - -
Gso4g0309 711 MobiDBLite consensus disorder prediction 673 711 - -
Gso4g0309 711 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Gso4g0309 711 MobiDBLite consensus disorder prediction 631 711 - -
Gso4g0309 711 ProSiteProfiles Protein kinase domain profile. 338 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0309 711 SMART serkin_6 338 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0309 711 Gene3D Laminin 214 249 - -
Gso4g0309 711 Gene3D Transferase(Phosphotransferase) domain 1 414 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0309 Gso-Chr4 2789114 2795135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0309 1 705 Receptor kinase-like Gene Family AT2G23450 50.000 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso4g0309 Pkinase 6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0309 - - gmx:100809858 1343.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0309 4 2789114 2795135 Gso4g0309 4 2789114 2795135 ECH
Gso4g0309 4 2789114 2795135 Gso6g0290 6 2706716 2712602 GST