Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0303 ATGGCAAGTGGGTTTGGGGAATCAACAGGGAGATCACCCCCAAGCCCTTCCTACTTCAACAACAATAATAACAATGATGCTGCCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGACCCGATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCCTGTCTTTACAAATGGCTTCACTTTCACTCACAATCACGAGAATGCCCGGTGTGCAAGGCCCTCGTGGAGGAGGAGAAGCTGGTTCCCTTGTATGGGAGAGGAAAGTCGTCGACTGATCCAAGATCAAAATCTATTCCGGGCGATAACATCCCGCATCGTCCGGCTGGTCAGAGGCCTGAAACTGCTCCTCCACCTGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGCTTGGGGGGATTTGCGCCACCGCCGATGGCAACAACAAGATTTGGGAATTTTGCATTGTCCGCAGCTTTTGGTGGTTTTATACCATCCTTATTCAACTTTCAGTTGCATGGGTTTCATGATGCTGCCATGTATGGGGGAGGGGCTGGTTTTCCTCATGGATTTGCCAATACATTTCATGGTGTCCATGCTCATGGATTCCCTCTGCGCACCCATCAAGGGCAACAAGATTATTATTTGAAGAAGCTTCTTCTATTTGTTGTTTTGTGTGTTGTTCTTGCTTTTATATGGCAATAG 696 0.4598 MASGFGESTGRSPPSPSYFNNNNNNDAANFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKSSTDPRSKSIPGDNIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFAPPPMATTRFGNFALSAAFGGFIPSLFNFQLHGFHDAAMYGGGAGFPHGFANTFHGVHAHGFPLRTHQGQQDYYLKKLLLFVVLCVVLAFIWQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0303 231 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Gso4g0303 231 MobiDBLite consensus disorder prediction 86 123 - -
Gso4g0303 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso4g0303 231 MobiDBLite consensus disorder prediction 1 20 - -
Gso4g0303 231 CDD RING-HC_AtRMA_like 30 74 - -
Gso4g0303 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Gso4g0303 231 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Gso4g0303 231 PANTHER OS12G0636000 PROTEIN 2 231 - -
Gso4g0303 231 SMART ring_2 32 72 IPR001841 -
Gso4g0303 231 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Gso4g0303 231 SUPERFAMILY RING/U-box 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0303 Gso-Chr4 2739151 2740983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0303 30 214 C3H Transcription Factor Family AT1G19310 69.474 5.03e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0303 K10666 - gmx:100794086 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0303 4 2739151 2740983 Gso6g0285 6 2670012 2671828 GST