Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0256 ATGGGGCTTCATGCGACGTGGCATCCCCACCAAAGACCCTTAAACCCGGGTCTCATCAACCCCAATTACTTCATGTCTGGACAAGAGGCACGTGAGCCTTGTAACAACCCACCTGTGGAGCAGCATAATATAACCAGTGACTACTTTTACAATACTGGGAGTGGCACTTTTGCTTCTTCTTCCCCTTTGAACAACCGTTCTCCTAATTCCACCAGCTCTTATGCTGCTGTCATTGGGAACTCCAGGTACCTCAAACCGGTTCAGTCCCTTCTTGAAGATCTTGTTGATGTTGGTGGAAATGTGGTTGATAGAATCAATGAGAAGTATGCTGAGAAGTTGTTTCGTGGGAGTAGAGGCAGTGCTAGGACACTTTCCTCAGAGTTGAAGGCAGAGTTGGGGAATAATGGTCATTTATTGGCTGACAAACATGAACATCAAATCAAAATTGCACGGTTGATTACTTTATTGGATGAGGTTGAGGGAAGGTGTGAGAAATACTACCATCAAATGGAAGAAGTGGTGTCATCTTTTGAGATGATAGCAGGTTTGGGAGCTGCGAAGTGTTACACTGCTTTGGCACTTCAAGCCATGTCAAGGCATTTCTGCAGCTTGAGAGATGCCATATTGTCACAAATAAATGCTGAGAAAAGAAAACTCTTTCAGGATTTACCTAAGATCAGTAGTGGGTTGTCTCAACTAAGCTTGTTTGATAGAGACAGTAGACAGAGTAGAATGTCTCTCCAACAACTTGGGGTGATCCCAAGCCAACGCCAAGTTTGGAGACCCATCAGAGGGTTGCCTGAAACCTCTGTGGCTATTCTTCGTTCTTGGCTCTTCGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGCTGGCATCTCAGACAGGTTTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCACGAGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAGGAGTTTGGAGAGTTTTCTGAAGACTCCAACCCGGCTGGTAACAACTACTTGACGAGGGAAGATACCACGGATTGTGTAGAGGATTGA 1071 0.4416 MGLHATWHPHQRPLNPGLINPNYFMSGQEAREPCNNPPVEQHNITSDYFYNTGSGTFASSSPLNNRSPNSTSSYAAVIGNSRYLKPVQSLLEDLVDVGGNVVDRINEKYAEKLFRGSRGSARTLSSELKAELGNNGHLLADKHEHQIKIARLITLLDEVEGRCEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCSLRDAILSQINAEKRKLFQDLPKISSGLSQLSLFDRDSRQSRMSLQQLGVIPSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGEFSEDSNPAGNNYLTREDTTDCVED* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0256 356 SMART HOX_1 260 324 IPR001356 GO:0003677
Gso4g0256 356 ProSiteProfiles 'Homeobox' domain profile. 279 320 IPR001356 GO:0003677
Gso4g0256 356 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 17 338 - -
Gso4g0256 356 Pfam Associated with HOX 77 208 IPR006563 -
Gso4g0256 356 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 338 - -
Gso4g0256 356 CDD homeodomain 260 321 IPR001356 GO:0003677
Gso4g0256 356 SMART prehox3 72 210 IPR006563 -
Gso4g0256 356 Pfam Homeobox KN domain 277 316 IPR008422 GO:0003677|GO:0006355
Gso4g0256 356 Gene3D - 255 334 - -
Gso4g0256 356 MobiDBLite consensus disorder prediction 333 356 - -
Gso4g0256 356 SUPERFAMILY Homeodomain-like 266 327 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0256 Gso-Chr4 2355848 2358585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0256 71 339 Homeobox Transcription Factor Family AT2G16400 48.561 7.85e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso4g0256 POX 8.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0256 - - gmx:100792161 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0256 4 2355848 2358585 Gso6g0235 6 2278693 2281251 GST
Gso4g0256 4 2355848 2358585 Gso17g2149 17 41142207 41146638 PCT