Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0255 ATGTATCCCAACCAAGCCTTTTCTTTAGGGTCCTATGCGGAGATGATGTCTGGGACTTCTCTTTTTCCTCATGACTACAGTGAAACTGTAGGAGGAGGACAAAACGAGGTTAAGTTTATCACAGCAATGGGTGAGACAGTGACTATGCACTCTATTAATGGCCATTCCAATGCTGCAAGTGGTGATCCAGCATGCAACTCTTTTGCTGGGGATTCCCATGTTGTTTCAAGGACACAAATGGGAATGGTAGATAGTGAGCAAAACATCAATTGCCAGGGCCTATCTCTCAGTCTCGGGACACTCATGCCTTCTAATGCATCCGTCTCTCCATTTCAATACCAATATCACGACACGGGTCTCTTACCACTAATGAATGATTTTCCAAATATAAAGGGAACCATGTCTCTCAAAGATGATGAGGCCAATAACCTACATGGAGAGTTTAGAAGTGTTGAATGCATGGCATCTGTGTCCTCTGGAGGCTTTCATGACATGATAAAAAAGGAGGGTTTTTACAACCCCAACCACCCCTCAATGTGTCTTAAAGAAGTCCCCTCTGATCTACCAGGTTACTCAAACAGCATTTTGAACTCCCAATACCTTAAGGCGGCACAGGAGTTACTTGATGAAATAGTTAGTGTCCAAAAGGCTTTGAAGCAATCTGGAATGGAAAAACAAGAGAACAACCGTGACATTGGATTAGATGGCTCTAAAGATGCTGATGGAAAATCTACCAGTCAATCTATGCAAATGTCTTCTGCCCCTAATGGTTCCAGTGCCAATGCTTCTAGTGACCTATCGTCTGCAGAACGCCAGACCTTGTTGGACAAGAAAACAAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCCGGGTGTGGAGCAGCAGAACCATATACTACACTTGCTTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAAGTGACACAAAGAAGCCTTGGGGAGCAAGAGGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAACAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGGCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAGGTGGCAAATTGGTTCATCAATGCAAGGGTGCGTCTCTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGATTCCGAGATGAACTGCAACCTTTCATCTGAGAACAACACGGTCAAAGGTAAAAGAGATGATGTTCAAGAGTCTGATAACATTAACAATAATAATAATAAATGGGAAGAGTCACAGGACAATTTAGTAACTGTTGACAGTGTGCAAGTCCAACCTCAAGCAGAAATGGATAGAGTGGTCAATGTAGAAAATGTGGTGATGAATTCTGGAACTGGGAAATTGCAGGGTGACCAAAACCAACAAAGGCTTGGCTTGAACAACAACAACAACAGCAGCAGCAACTTTTATTCTATCTCAACCAACGAGAATGGTGGGGATGGAGGCCTAATGGGTACTTCTACTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGTAGCCACGTTTCCCTTGCATTGGAGTTGAGGAACTGTGAAAATGATGGGTTTGCCATGTCTGATGATGCCATACAGAAACGACGTAAGCAAACATTGTCCTCTTCCCCGGAGACTGATTTGCTAGATTATCATTTCACGGATTCAGGAAAGCAACAGCACAGGTTTGGCAATCCCCATTTGCTGCATGAGTTTGTCGTATGA 1941 0.4395 MYPNQAFSLGSYAEMMSGTSLFPHDYSETVGGGQNEVKFITAMGETVTMHSINGHSNAASGDPACNSFAGDSHVVSRTQMGMVDSEQNINCQGLSLSLGTLMPSNASVSPFQYQYHDTGLLPLMNDFPNIKGTMSLKDDEANNLHGEFRSVECMASVSSGGFHDMIKKEGFYNPNHPSMCLKEVPSDLPGYSNSILNSQYLKAAQELLDEIVSVQKALKQSGMEKQENNRDIGLDGSKDADGKSTSQSMQMSSAPNGSSANASSDLSSAERQTLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMNCNLSSENNTVKGKRDDVQESDNINNNNNKWEESQDNLVTVDSVQVQPQAEMDRVVNVENVVMNSGTGKLQGDQNQQRLGLNNNNNSSSNFYSISTNENGGDGGLMGTSTHATYDLSELGNFTVGSHVSLALELRNCENDGFAMSDDAIQKRRKQTLSSSPETDLLDYHFTDSGKQQHRFGNPHLLHEFVV* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0255 646 MobiDBLite consensus disorder prediction 457 487 - -
Gso4g0255 646 MobiDBLite consensus disorder prediction 223 238 - -
Gso4g0255 646 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 612 - -
Gso4g0255 646 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 612 - -
Gso4g0255 646 SMART prehox3 189 339 IPR006563 -
Gso4g0255 646 SMART HOX_1 380 444 IPR001356 GO:0003677
Gso4g0255 646 MobiDBLite consensus disorder prediction 240 270 - -
Gso4g0255 646 MobiDBLite consensus disorder prediction 219 270 - -
Gso4g0255 646 SUPERFAMILY Homeodomain-like 381 447 IPR009057 -
Gso4g0255 646 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Gso4g0255 646 MobiDBLite consensus disorder prediction 521 540 - -
Gso4g0255 646 Gene3D - 377 454 - -
Gso4g0255 646 CDD homeodomain 380 441 IPR001356 GO:0003677
Gso4g0255 646 Pfam Associated with HOX 195 338 IPR006563 -
Gso4g0255 646 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0255 Gso-Chr4 2349822 2353702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0255 92 462 Homeobox Transcription Factor Family AT1G19700 52.219 9.07e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso4g0255 POX 8.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0255 - - gmx:100791641 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0255 4 2349822 2353702 Gso4g0255 4 2349822 2353702 ECH
Gso4g0255 4 2349822 2353702 Gso6g0234 6 2272219 2276663 GST
Gso17g2149 17 41142207 41146638 Gso4g0255 4 2349822 2353702 PCT
Gso4g0255 4 2349822 2353702 Gso14g0607 14 5941507 5946045 PCT