Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0247 ATGCTGAAATCGGGCATTGGAATTGAGGAGAGGAAGCAATTGAAGAAGCCAGCACAAGCCAGCTCGAGAAAGGGTTGCATGAGAGGAAAAGGAGGTCCTGAGAATGCTAGTTGCACCTACAAAGGTGTGAGACAGAGAACATGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAATCGAGGTGCTCGGCTCTGGCTCGGGACTTTTGAGACCTCTCATGAAGCTGCTTTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGCTCTGATGCCAAACTCAATTTACCAGAACTCTCTATCAAATCTCAATCTCAGTGTCCACCACCATCACCACCACCACCTTCTTCTGTTACCAACAACACTCAAATGGAAAACCTGCAGCAGATTCAAAACAATTACATAGACATGGCTACGTGTTCTAATTTCAACAACATCAATAATCCAGAAGTTTCCATGGCCTCTCAGCAGGTTGGAGTTGGACCAATTTACACCAGTGACTCCATCGTGTCTCTTCCCTTGGACACCAATCCCAAGCCTGTGGAGAATGAGGTCGAGTTTCGTCCATCGTGGGCGACAATGAACGAGGGTTTGCCGGTTTTCGATGATTCCATTTGGGCTGAAGCTGCTATGTCTCTAGATTTTCCTCACATTGCAGCAGAGACTGCGATTTACGCGTCGGGGAACAACTTGGCTGATGTTGGTGTTTGGGACTCTCTGCAAACCCCATGGTGCATGTAA 738 0.4783 MLKSGIGIEERKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSDAKLNLPELSIKSQSQCPPPSPPPPSSVTNNTQMENLQQIQNNYIDMATCSNFNNINNPEVSMASQQVGVGPIYTSDSIVSLPLDTNPKPVENEVEFRPSWATMNEGLPVFDDSIWAEAAMSLDFPHIAAETAIYASGNNLADVGVWDSLQTPWCM* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0247 245 MobiDBLite consensus disorder prediction 101 120 - -
Gso4g0247 245 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Gso4g0247 245 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Gso4g0247 245 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gso4g0247 245 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Gso4g0247 245 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Gso4g0247 245 MobiDBLite consensus disorder prediction 1 17 - -
Gso4g0247 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 236 - -
Gso4g0247 245 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gso4g0247 245 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Gso4g0247 245 MobiDBLite consensus disorder prediction 1 34 - -
Gso4g0247 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 236 - -
Gso4g0247 245 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0247 Gso-Chr4 2293225 2294534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0247 15 242 AP2-EREBP Transcription Factor Family AT1G75490 45.923 5.13e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso4g0247 AP2 7.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0247 - - gmx:100790057 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0247 4 2293225 2294534 Gso4g0247 4 2293225 2294534 ECH
Gso4g0247 4 2293225 2294534 Gso6g0228 6 2204438 2205814 GST
Gso14g0600 14 5877683 5878999 Gso4g0247 4 2293225 2294534 PCT
Gso17g2155 17 41200779 41201969 Gso4g0247 4 2293225 2294534 PCT
Gso4g0247 4 2293225 2294534 Gso14g0600 14 5877683 5878999 PCT
Gso4g0247 4 2293225 2294534 Gso17g2155 17 41200779 41201969 PCT