Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0243 ATGGCTGGTTTCTTCTCTCTAGGTGGGACACAAAACAAGGAAGAAGAGGAAGTAGAAAAAGGAGACAAGAATAACCTATTGCTGTTGAGGAACGAGGAGATCTACAACAACAAGGGTGGGTTCGAGATATGGCCACAGTCGTCGTCGTCGTATCACTTGAGCAACTACTTTGCGTTTGGAGTGGGTCCTAGTCGCAGGAACAGGTCGGAGGATGTTTCATTGTGCGTGTCGGAGGATGAGTCTACGAGATTTGGATTAAGTGTGATGAGGACTGGAGGAAGCAGCAGCAGCAGCATGAGCATGAACTGTCAGGACTGTGGGAACCAAGCCAAGAAAGACTGCGCGCATCTTAGATGCAGGACTTGCTGTAAGAGCCGAGGGTTTCAGTGTCAGACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGCCGCGAACGACACCAACAACTCGCTGAGTTGCAGCTACAACAACAATTCCGTGGAGTAGGAGACAATATTCCTAAACGACATCATCCAGATACTACTACTAGTACTCAACTTGCCTCCGCTCCACAACCCGTTACAGGGTTAGAGCTGGGACAATTCCCAGCTGAAGTGAGCACTTCGGCGTCGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACGCTTCAGATGAACAGTATGCGTATCAAACCTCTGTCAACATCGGAGGACATGTTTTCAAGGGATTTCTCTACGATCAAGGTCCTGAAAGTTCTTACACTGGTGCAGCAGCTGAGGGTTCCTCCGGTGGTGAACCTCAACAACTTGGTTTTATAACCGCCGCCGCAACCACAGCCACAACAAGTGGGAACAGCCCATTTGACCCTTCACTTTACCCAGCTCCGTTGAATGCTTTCATGGCTGGTACGCAATTCTTCCAACCCCCAAGGTCCTAA 918 0.5044 MAGFFSLGGTQNKEEEEVEKGDKNNLLLLRNEEIYNNKGGFEIWPQSSSSYHLSNYFAFGVGPSRRNRSEDVSLCVSEDESTRFGLSVMRTGGSSSSSMSMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAELQLQQQFRGVGDNIPKRHHPDTTTSTQLASAPQPVTGLELGQFPAEVSTSASFRCVRVSAVDASDEQYAYQTSVNIGGHVFKGFLYDQGPESSYTGAAAEGSSGGEPQQLGFITAAATTATTSGNSPFDPSLYPAPLNAFMAGTQFFQPPRS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0243 305 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 195 243 IPR006511 -
Gso4g0243 305 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 303 IPR007818 GO:0003700|GO:0006355
Gso4g0243 305 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 102 144 IPR006510 -
Gso4g0243 305 MobiDBLite consensus disorder prediction 1 21 - -
Gso4g0243 305 MobiDBLite consensus disorder prediction 164 184 - -
Gso4g0243 305 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 303 - -
Gso4g0243 305 Pfam Domain of unknown function (DUF702) 100 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0243 Gso-Chr4 2224518 2227036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0243 1 305 C2H2 Transcription Factor Family AT1G75520 43.750 1.06e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso4g0243 DUF702 3.3e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0243 - - gmx:100818588 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0243 4 2224518 2227036 Gso4g0243 4 2224518 2227036 ECH