Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0239 ATGAAGATCCACTGCGACGTGTGTAACAAGCACCAGGCCTCTTTCTTCTGCACCGCCGACGAAGCTGCCCTATGCGACGGCTGCGACCACCGCGTCCACCACGCCAACAAGCTCGCCTCCAAACACCAACGCTTCTCCCTCACCCACCCCTCTGCGAAACATTTTCCCCTCTGCGATGTTTGCCAGGAGAGAAGAGCCTTCGTGTTTTGTCAGCAAGATAGAGCGATTCTGTGCAAAGAGTGTGACGTGCCCATTCATTCTGCCAACGACCTCACCAAGAACCATAGCAGGTTTCTTCTCACTGGGATTAAGTTCTCTGCTTCTGCCACGCCTTATGATTATTCATCACCACCACCACCACCACCACCACCACCCAAGAGAAACCCTGTTCTCGATTCTCCTTCAACACCGTCACCGCCTAAGCCTGGGGGAAACTCGCTAACAAACGAAGAAGAACCTGGTTTCACAGGTAGCAGCATTTCAGAGTACTTGATAAACTCTATCCCAGGCATGAAGTTCGAAGATTTCCTCGATTCACATTCTCTTCCCTTTGCTTGCTCCAAGAATAGTGATGACATGTTGTCGCTGTTTGGTGAGGGAAACATGGTTTCTTTCTCACCCGGTGGGTTCTGGGTTCCTCAAGCACCACCATCTTCAGTACAAATGGATCGGCAGAGTGGGTACAGAGAGACAAGGGAAGGTAGCATTAGATCAAGTTTTGGAGATGATAATTTCATAGTTCCACAGATGAGTCCTCCCAGCAATGTGTCTAATAAGAGATCCAGGCTTCTCTGGTAA 798 0.4987 MKIHCDVCNKHQASFFCTADEAALCDGCDHRVHHANKLASKHQRFSLTHPSAKHFPLCDVCQERRAFVFCQQDRAILCKECDVPIHSANDLTKNHSRFLLTGIKFSASATPYDYSSPPPPPPPPPKRNPVLDSPSTPSPPKPGGNSLTNEEEPGFTGSSISEYLINSIPGMKFEDFLDSHSLPFACSKNSDDMLSLFGEGNMVSFSPGGFWVPQAPPSSVQMDRQSGYRETREGSIRSSFGDDNFIVPQMSPPSNVSNKRSRLLW* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0239 265 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Gso4g0239 265 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 262 - -
Gso4g0239 265 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gso4g0239 265 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso4g0239 265 Gene3D Classic Zinc Finger 1 95 - -
Gso4g0239 265 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 262 - -
Gso4g0239 265 MobiDBLite consensus disorder prediction 231 265 - -
Gso4g0239 265 CDD Bbox1_BBX-like 5 47 - -
Gso4g0239 265 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Gso4g0239 265 MobiDBLite consensus disorder prediction 242 265 - -
Gso4g0239 265 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso4g0239 265 CDD Bbox1_BBX-like 57 100 - -
Gso4g0239 265 MobiDBLite consensus disorder prediction 113 141 - -
Gso4g0239 265 MobiDBLite consensus disorder prediction 111 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0239 Gso-Chr4 2182858 2184379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0239 1 265 C2C2-CO-like Transcription Factor Family AT1G75540 38.728 8.05e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso4g0239 zf-B_box 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0239 - - gmx:100785978 513.072