Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0236 ATGGCTACAACGGTTATATTCTTCAGCTTCACCCTCGTCGCCTTCTTCGCCACCCTAACCTTGGCACACAACAACACCTCGTTTGAGATTCAAGCCTTGACCTCTTTCAAGCGCAGCCTCCACGACCCTCTGGGTTCCTTGGACGGTTGGGACCCTTCCACTCCTTCAGCACCCTGCGACTGGCGCGGCATTGTCTGCCACAACAACCGAGTCCACCAGCTCCGCTTACCGCGTCTCCAACTCTCGGGTCAACTCTCTCCTTCTCTCTCCAATCTTCTTCTACTCCGCAAACTCAGTCTCCACTCCAACGACCTCAACTCCTCCATCCCCCTTTCTCTCACGCGTTGCGTCTTCCTACGCGCCGTTTACCTCCACAACAACAAACTCTCCGGCCACCTTCCTCCTCCGCTTCTAAACCTCACCAACCTCCAAATCCTCAACCTCGCCCGCAACCTCCTCACCGGAAAAGTCCCCTGCTACCTCTCCGCCTCCCTCCGGTTCCTCGACCTCTCCGACAACGCCTTCTCCGGTGACATTCCGGCCAACTTCAGCTCCAAATCATCTCAGCTCCAGCTCATCAACCTCTCCTACAACAGCTTCTCCGGAGGAATACCTGCCTCCATCGGAACGCTGCAATTTCTTCAGTACCTATGGTTAGACTCAAACCACATTCACGGAATCCTACCTTCCGCCCTCGCGAACTGTTCCTCTCTGGTGCACCTGACCGCAGAGGATAACGCTCTCACTGGACTTCTTCCTCCTACCCTCGGATCCATGCCCAAGCTTCAAGTCCTTTCGCTTTCGCGGAACCAGCTTTCGGGTTCGGTCCCCGCGTCTGTGTTCTGCAACGCGCACCTGCGAAGCGTGAAGCTCGGGTTTAATTCCCTCACGGGTTTTTCCACGCCGCAAAGTGGTGAATGCGACAGCGTTTTGGAGGTTTTGGATGTTAAAGAGAACGGCATTGCTCACGCGCCGTTTCCCACGTGGTTGACCCACGCTGCGACCACGTCGTTGAAGCTTCTCGATGTTTCTGGAAACTTCTTTGCCGGCTCTCTGCCGGTGGACATTGGGAACCTTTCCGCGTTACAAGAGTTGAGAATGAAGAATAATTTGTTATCCGGTGAAGTTCCGGTTAGCATTGTGAGTTGTAGGTTGTTGACGGTTCTTGATCTTGAGGGTAACCGGTTCTCTGGGTTAATTCCTGAGTTTCTTGGGGAACTGCCGAACCTGAAGGAATTGTCTCTTGGCGGTAACATTTTTACCGGTTCGGTTCCTTCTAGTTATGGAACGCTTTCTGCGCTTGAGACGCTGAATTTGAGTGATAATAAGTTAACCGGTGTGGTGCCTAAGGAGATCATGCAATTGGGGAACGTGAGCGCTTTGAATTTGAGCAATAACAATTTTTCGGGTCAAGTTTGGTCTAATATTGGGGACTTGACGGGTTTGCAGGTTCTTAATTTGAGTCAGTGTGGCTTTTCAGGAAGGGTTCCTAGTTCGTTGGGGAGTTTGATGAGACTAACGGTTTTGGATTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCCCTTGAGGTTTTCGGGTTACCGAGTCTGCAAGTTGTGGCGCTTCAAGAAAACCGTTTGAGTGGTGAAGTTCCTGAGGGTTTCAGCAGCATAGTTAGTTTGCAGTATCTTAACCTCACCTCAAATGAATTTGTTGGTAGCATTCCAATAACTTATGGATTCCTTGGTTCTTTGAGGGTTCTCTCTTTGTCTCACAATGGTGTTTCTGGTGAAATACCTCCCGAGATTGGTGGTTGTTCGCAACTTGAAGTTTTTCAGCTGCGGTCAAATTTTCTAGAGGGTAACATTCCGGGTGATATCTCTCGGCTCTCTCGTTTAAAGGAGCTTAATTTGGGACACAACAAGTTGAAAGGTGATATCCCAGATGAAATATCGGAGTGTTCTGCTTTGAGTTCACTCTTGTTGGATAGTAATCACTTCACGGGTCATATACCAGGCTCCTTATCAAAATTGTCAAATTTGACAGTGTTGAACCTTTCTTCAAATCAATTGATAGGGGAAATTCCGGTTGAACTATCAAGCATTTCTGGTTTGGAGTATTTCAATGTGTCTAATAATAACCTCGAGGGTGAGATTCCTCACATGCTAGGTGCTACATTCAATGACCCTTCTGTGTTTGCAATGAACCAAGGGCTATGCGGGAAGCCCTTGCACAGAGAATGTGCAAATGAAATGAGGAGAAAGAGGAGAAGGCTAATAATCTTCATAGGGGTGGCCGTGGCTGGTTTATGCCTTTTGGCATTGTGTTGCTGTGGCTATGTTTACAGCCTCTTGAGGTGGCGCAAGAAGCTTCGAGAAGGGGTAACCGGTGAGAAGAAAAGGAGCCCCACAACAAGTAGTGGAGGAGAGAGAGGTAGCAGAGGGAGTGGGGAAAACGGGGGACCAAAACTAGTGATGTTCAACAACAAGATCACGTTGGCGGAGACATTGGAAGCAACGAGAAACTTCGACGAAGAGAACGTGTTGAGCAGGGGAAGATATGGCCTTGTGTTCAAAGCCTCCTACCAAGACGGAATGGTTCTCTCCATTCGTCGTTTTGTTGATGGGTTCATAGATGAAAGCACCTTCCGCAAAGAAGCAGAATCACTGGGCAAAGTGAAGCATAGAAACTTAACAGTTCTACGTGGTTACTATGCAGGCCCACCCGAAATGAGACTTCTTGTGTATGACTACATGCCCAACGGGAACTTAGGAACACTACTTCAAGAGGCTTCTCAGCAAGATGGCCATGTGCTGAATTGGCCAATGCGTCACCTCATTGCGCTAGGCATAGCTCGCGGTCTAGCTTTCTTGCATTCGGTGCCAATAGTTCATGGAGACGTGAAGCCGCAAAATGTTCTCTTTGATGCAGATTTTGAAGCCCATTTGTCTGAATTTGGGTTGGAGCGGTTGACAATAGCAGCACCAGCTGAAGCATCATCGTCCTCCACCCCAGTTGGGTCCTTAGGGTATGTTTCACCGGAAGCGGCATCGAGTGGGATGGCCACCAAGGAGGGTGACGTGTATAGCTTTGGGATTGTGTTGTTGGAGATACTAACGGGGAAGAAACCGGTGATGTTCACGGAGGATGAGGACATAGTGAAGTGGGTGAAGAAGCAGTTACAAAGGGGCCAAATTTCGGAATTGTTGGAGCCAGGGTTGCTTGAGCTTGACCCAGAGTCTTCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTTGGTCTCCTATGCACAGCAACGGATCCTCTTGATCGACCATCCATGTCTGACGTTGCTTTCATGCTCCAAGGTTGCCGGGTTGGACCAGAAATTCCATCATCAGCTGATCCCACAACACTACCTTCCCCTGCATGA 3393 0.4937 MATTVIFFSFTLVAFFATLTLAHNNTSFEIQALTSFKRSLHDPLGSLDGWDPSTPSAPCDWRGIVCHNNRVHQLRLPRLQLSGQLSPSLSNLLLLRKLSLHSNDLNSSIPLSLTRCVFLRAVYLHNNKLSGHLPPPLLNLTNLQILNLARNLLTGKVPCYLSASLRFLDLSDNAFSGDIPANFSSKSSQLQLINLSYNSFSGGIPASIGTLQFLQYLWLDSNHIHGILPSALANCSSLVHLTAEDNALTGLLPPTLGSMPKLQVLSLSRNQLSGSVPASVFCNAHLRSVKLGFNSLTGFSTPQSGECDSVLEVLDVKENGIAHAPFPTWLTHAATTSLKLLDVSGNFFAGSLPVDIGNLSALQELRMKNNLLSGEVPVSIVSCRLLTVLDLEGNRFSGLIPEFLGELPNLKELSLGGNIFTGSVPSSYGTLSALETLNLSDNKLTGVVPKEIMQLGNVSALNLSNNNFSGQVWSNIGDLTGLQVLNLSQCGFSGRVPSSLGSLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENRLSGEVPEGFSSIVSLQYLNLTSNEFVGSIPITYGFLGSLRVLSLSHNGVSGEIPPEIGGCSQLEVFQLRSNFLEGNIPGDISRLSRLKELNLGHNKLKGDIPDEISECSALSSLLLDSNHFTGHIPGSLSKLSNLTVLNLSSNQLIGEIPVELSSISGLEYFNVSNNNLEGEIPHMLGATFNDPSVFAMNQGLCGKPLHRECANEMRRKRRRLIIFIGVAVAGLCLLALCCCGYVYSLLRWRKKLREGVTGEKKRSPTTSSGGERGSRGSGENGGPKLVMFNNKITLAETLEATRNFDEENVLSRGRYGLVFKASYQDGMVLSIRRFVDGFIDESTFRKEAESLGKVKHRNLTVLRGYYAGPPEMRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLERLTIAAPAEASSSSTPVGSLGYVSPEAASSGMATKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0236 1130 SUPERFAMILY RNI-like 312 519 - -
Gso4g0236 1130 MobiDBLite consensus disorder prediction 788 817 - -
Gso4g0236 1130 ProSiteProfiles Protein kinase domain profile. 836 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0236 1130 Pfam Leucine rich repeat 577 636 IPR001611 GO:0005515
Gso4g0236 1130 Pfam Leucine rich repeat 649 708 IPR001611 GO:0005515
Gso4g0236 1130 Pfam Leucine rich repeat 408 468 IPR001611 GO:0005515
Gso4g0236 1130 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Gso4g0236 1130 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Gso4g0236 1130 Gene3D Ribonuclease Inhibitor 474 750 IPR032675 -
Gso4g0236 1130 Gene3D Ribonuclease Inhibitor 189 473 IPR032675 -
Gso4g0236 1130 PRINTS Leucine-rich repeat signature 434 447 - -
Gso4g0236 1130 PRINTS Leucine-rich repeat signature 671 684 - -
Gso4g0236 1130 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1126 - -
Gso4g0236 1130 Gene3D Transferase(Phosphotransferase) domain 1 912 1116 - -
Gso4g0236 1130 SMART serkin_6 836 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0236 1130 Gene3D Ribonuclease Inhibitor 26 188 IPR032675 -
Gso4g0236 1130 SUPERFAMILY L domain-like 461 716 - -
Gso4g0236 1130 SUPERFAMILY Protein kinase-like (PK-like) 816 1119 IPR011009 -
Gso4g0236 1130 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Gso4g0236 1130 Pfam Protein kinase domain 838 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso4g0236 1130 ProSiteProfiles Leucine-rich repeat profile. 625 647 IPR001611 GO:0005515
Gso4g0236 1130 PANTHER LRR RECEPTOR-LIKE KINASE 3 1126 - -
Gso4g0236 1130 Gene3D Phosphorylase Kinase; domain 1 812 911 - -
Gso4g0236 1130 SUPERFAMILY L domain-like 29 319 - -
Gso4g0236 1130 SMART LRR_typ_2 575 599 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 211 234 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 431 454 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 140 177 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 359 383 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 671 695 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 527 550 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 479 503 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 407 430 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 623 647 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 259 283 IPR003591 -
Gso4g0236 1130 SMART LRR_typ_2 92 116 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0236 Gso-Chr4 2152319 2155943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso4g0236 1 1130 Receptor kinase-like Gene Family AT1G75640 63.923 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Gso4g0236 Pkinase 4.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0236 - - gmx:100784917 2117.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0236 4 2152319 2155943 Gso4g0236 4 2152319 2155943 ECH
Gso4g0236 4 2152319 2155943 Gso6g0213 6 2052289 2055965 GST